Set up conda with multiple group storage locations on HiPerGator, including cache isolation
Evaluation of BaSiC illumination correction caching - NOT RECOMMENDED for sparse markers. Trigger: optimizing BaSiC, caching illumination correction
KINTSUGI processing principles: Never sacrifice quality for speed, always use GPU when available. Trigger: performance optimization, CPU/GPU choice, fast mode, quality vs speed.
Pattern for deprecating external dependencies while maintaining backward compatibility. Trigger: removing Java/FIJI/MATLAB, deprecating optional deps
GPU-safe parallel processing patterns for KINTSUGI to prevent OOM crashes and ensure Jupyter-compatible progress output
KINTSUGI deconvolution: True lightsheet PSF calculation to fix horizontal banding artifacts. Trigger: deconvolution artifacts, horizontal banding, PSF issues, fcyl, slitwidth,…
Efficient development testing workflow for HPC environments with VS Code tunneling. Trigger: testing code changes on HPC, development workflow with external data directories, VS…