Generate probe-skeleton YAML files at `lineage/{repo}/probes/{P-NNN}.yaml` from `feature-flows.yaml`'s uncovered test-matrix cells.
Run the feature-advisor query-time subagent over the full ontology to produce a structured impact assessment for a proposed feature or change.
Run one or more dynamic-verification probes against a local ephemeral docker-compose mirror of the target system.
Run the feature-reflector subagent (Layer 4b — top-down product-owner reflection) over one composed feature flow.
Run the adr-archaeologist reducer subagent over the per-node enrichment sidecars + concepts.yaml + existing adrs/.
Generate or refresh coverage manifest for a scanner — lists ALL items in scope so scans can track progress across sessions.
Run the doc-gap-finder reducer subagent over the per-node enrichment sidecars + the concept catalog + the live documentation site.
Draft an upstream-repo GitHub issue on disk. Creates the next ISS file under issues/{repo}/ with paste-ready frontmatter + body skeleton.
Analyze test coverage gaps. Use when user says "test coverage", "what's not tested", "coverage gaps", "missing tests", "coverage report", or "what needs testing".
Autonomous batch driver for the rev-2 agentic-ontology sprint. Picks the next pending theme from state/sprint-themes.yaml, spawns 5 file-analyser subagents in parallel, then 5…