Read biological sequence files (FASTA, FASTQ, GenBank, EMBL, ABI, SFF) using Biopython Bio.SeqIO. Use when parsing sequence files, iterating multi-sequence files, random — from…
Build reproducible scientific documents, presentations, and websites with Quarto supporting R, Python, Julia, and Observable JS.
Select restriction enzymes by criteria using Biopython Bio.Restriction. Find enzymes that cut once, don't cut, produce specific overhangs, are commercially available, or — from…
Predict restriction digest fragment sizes and gel patterns using Biopython Bio.Restriction. Computes fragment lengths and sequences for single and double digests on linear or…
Design and validate Type IIS scarless DNA assembly (Golden Gate, MoClo) using Biopython Bio.Restriction.
Create restriction maps showing enzyme cut positions on DNA sequences using Biopython Bio.Restriction.
Find restriction enzyme cut sites in DNA sequences using Biopython Bio.Restriction. Search with single enzymes, batches of enzymes, or commercially available enzyme sets — from…
Generate reverse complements and complements of DNA/RNA sequences using Biopython. Use when working with opposite strands, primer design, or converting between template a — from…
Create and manipulate Seq, MutableSeq, and SeqRecord objects using Biopython. Use when creating sequences from strings, modifying sequence data in-place, or building anno — from…
Slice, extract, and concatenate biological sequences using Biopython. Use when extracting subsequences, joining sequences, or manipulating sequence regions by position.
Dimensionality reduction and clustering for single-cell RNA-seq using Seurat (R) and Scanpy (Python).
Dimensionality reduction and clustering for single-cell RNA-seq using Seurat (R) and Scanpy (Python).
Read, write, and create single-cell data objects using Seurat (R) and Scanpy (Python). Use for loading 10X Genomics data, importing/exporting h5ad and RDS files, creating — from…
Read, write, and create single-cell data objects using Seurat (R) and Scanpy (Python). Use for loading 10X Genomics data, importing/exporting h5ad and RDS files, creating — from…
Test whether cell-type proportions or composition changed between conditions in single-cell data using Milo (miloR), scCODA, sccomp, and propeller.
Detect and remove doublets (multiple cells captured in one droplet) from single-cell RNA-seq data. Uses Scrublet (Python), DoubletFinder (R), and scDblFinder (R).
Detect and remove doublets (two or more cells in one droplet) from single-cell RNA-seq using scDblFinder (R), Scrublet (Python), and DoubletFinder (R).
Find marker genes and annotate cell types in single-cell RNA-seq using Seurat (R) and Scanpy (Python).
Find marker genes and annotate cell types in single-cell RNA-seq using Seurat (R) and Scanpy (Python).
Quality control, filtering, and normalization for single-cell RNA-seq using Seurat (R) and Scanpy (Python).
Quality control, filtering, and normalization for single-cell RNA-seq using Seurat (R) and Scanpy (Python).
Profiles non-miRNA small RNAs - tRNA-derived fragments (tRFs/tsRNAs), piRNAs, and rRNA/snoRNA-derived species - with MINTmap, unitas, SPORTS, and proTRAC.
Compares how a rhythm CHANGES between conditions, genotypes, treatments, tissues, or ages (differential rhythmicity), classifying each feature as gain-of-rhythm, loss-of-rhythm,…
Discovers periodic signals of unknown period in time-series omics data using Lomb-Scargle periodograms (scipy), autocorrelation, and wavelet time-frequency decomposition (pywt).
End-to-end 16S amplicon workflow from FASTQ reads to differential abundance. Orchestrates DADA2 ASV inference, taxonomy assignment, diversity analysis, and compositional — from…
Write biological sequences to files (FASTA, FASTQ, GenBank, EMBL) using Biopython Bio.SeqIO. Use when saving sequences, creating new sequence files, or outputting modifie — from…
Write biological sequences to files (FASTA, FASTQ, GenBank, EMBL) using Biopython Bio.SeqIO. Use when saving sequences, creating new sequence files, or outputting modifie — from…
Use when you have identified a package available in the Bioconda channel (indicated by a conda version badge or Bioconda recipe URL) and need to verify that installation succeeds…
Use when applying Biome's linting capabilities, rule categories, and code quality enforcement to JavaScript/TypeScript projects.
Biopython is a comprehensive set of freely available Python tools for biological computation. It provides functionality for sequence manipulation, file I/O, database access,…
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez) — from…
Advanced Biopython modules for motifs, population genetics, sequence utilities, restriction analysis, clustering, and GenomeDiagram visualization; use when you need extended…
Sequence alignment and alignment file processing with Biopython (Bio.Align/Bio.AlignIO), triggered when you need global/local pairwise alignment, MSA read/write/format conversion,…
Use Bio.Entrez to access NCBI databases (e.g., PubMed/GenBank) for searching, fetching summaries, and downloading records when your workflow needs to call the NCBI E-utilities API…
Use Bio.Phylo to read/write phylogenetic trees and perform visualization and statistics; use when tree parsing/conversion, pruning/rerooting, distance calculation, or plotting is…
Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB),…
Biopython sequence analysis: parse FASTA/FASTQ/GenBank/GFF (SeqIO), NCBI Entrez (esearch/efetch/elink), remote/local BLAST, pairwise/MSA alignment (PairwiseAligner,…
Use Biopython to read/write/convert biological sequence files (FASTA/GenBank/FASTQ, etc.) and perform basic sequence operations; use when you need reliable sequence I/O,…
Use Bio.PDB to parse and analyze protein structures (PDB/mmCIF) for structural bioinformatics tasks; use when you need structure parsing, geometry calculations, or structural…
Submit compact BioStudies and ArrayExpress API requests for free-text search and accession-based study retrieval.
Philippine BIR tax compliance skill for Pulser Finance (Tax Guru agent). Generates BIR 2307 / 2550M / 2550Q / SAWT / QAP / SLSP DAT files and PDFs via Foundry Code Interpreter;…
Organize X/Twitter bookmark folders (collections) via GraphQL with Chrome cookie auth. Actions: list folders, list folder contents, add/remove/move a bookmark between folders,…
Receive and verify Bitbucket Cloud webhooks. Use when setting up Bitbucket webhook handlers, debugging X-Hub-Signature verification, or handling repository and pull request events…
Покрывает кеширование в Bitrix — Cache (неуправляемый), ManagedCache, TaggedCache, автокеш ORM, кеш компонентов через startResultCache/endResultCache, композитный сайт, настройка…
Use when setting up Bknd SDK in a frontend application. Covers Api class initialization, token storage, auth state handling, React integration with BkndBrowserApp and use — from…
Use when troubleshooting Bknd issues, debugging errors, fixing common problems, or diagnosing why something isn't working.
Use when deploying a Bknd application to production hosting. Covers Cloudflare Workers/Pages, Node.js/Bun servers, Docker, Vercel, AWS Lambda, and other platforms.
Use when serving uploaded files to users. Covers API-proxied file serving, direct storage URLs (S3/R2/Cloudinary), CDN configuration, public file URLs, caching headers, i — from…
Use when serving uploaded files to users. Covers API-proxied file serving, direct storage URLs (S3/R2/Cloudinary), CDN configuration, public file URLs, caching headers, i — from…
Use when configuring storage backends for file uploads. Covers S3-compatible storage (AWS S3, Cloudflare R2, DigitalOcean Spaces), Cloudinary media storage, local filesystem…
Use when writing tests for Bknd applications, setting up test infrastructure, creating unit/integration tests, or testing API endpoints.
Apply Eskil Steenberg's black box architecture principles to build modular, maintainable software. Automatically refactors code into replaceable components, designs system…
Google SRE-style blameless postmortem authoring. Structure, timeline construction, contributing-factor extraction, action-item discipline, and the cultural practices that make…
Analyze the impact of code changes by mapping call graphs and identifying all direct and indirect dependencies.
Run remote BLAST searches against NCBI databases using Biopython Bio.Blast. Use when identifying unknown sequences, finding homologs, or searching for sequence similarity — from…
Blazor component architecture, Razor component patterns, Radzen UI library, and Blazor-specific UX patterns.
Comprehensive Blazor development expertise covering Blazor Server, WebAssembly, and Hybrid apps. Use when building Blazor components, implementing state management, handling…
Blazor Server, WASM, Hybrid, Static SSR patterns for .NET 10 — render mode decisions, component architecture, code-behind, state management, EventCallback, cascading values, @key,…
Blender 3D creation suite for modeling, animation, rendering, compositing, video editing, and game development.
Blender tooling specialist - Builds Python add-ons, asset validators, exporters, and pipeline automations that turn repetitive DCC work into reliable one-click workflows