Detect the current pipeline stage for a work item and run the next stage. Handles approval gates by invoking /pipeline-approve.
Pipeline autonomo end-to-end: env check -> typecheck -> lint -> test -> build -> deploy -> smoke test. Auto-recovery em cada etapa (max 3 tentativas).
Pipeline Issue→SPEC→Build→Verify→Test. Toda GitHub Issue gera SPEC antes de implementar, e toda implementacao e verificada contra a SPEC e testada.
Codex skill alias for /pipeline-assess. Pre-plan assessment of current codebase and UX state
Analyze pipeline health — prioritize deals, flag risks, get a weekly action plan. Use when running a weekly pipeline review, deciding which deals to focus on this week, spotting…
dev-pipeline のフェーズ間状態管理。PIPELINE-STATE.md の init/update/read/transition を提供する。USE WHEN dev-pipeline 各フェーズ境界での進捗記録、複数セッションに跨る構造化進捗管理、エスカレーションキューの操作。SKIP 単一セッションの作業引き継ぎは…
Conception de pipelines NLP (tokenization, embeddings, NER, sentiment, summarization) — from general/workflow-pipelines
Apache Airflow DAGs, operators, SLA monitoring, and workflow orchestration. Activate on: Airflow, DAG, operator, sensor, scheduler, task dependency, SLA, backfill, XCom.
Эксперт AutoML. Используй для automated machine learning, hyperparameter tuning и model selection.
Spark, pandas, polars, DuckDB optimization for batch data processing. Activate on: batch processing, Spark optimization, polars, DuckDB, pandas performance, data frame, shuffle,…
Beam Pipeline Builder - Auto-activating skill for Data Pipelines. Triggers on: beam pipeline builder, beam pipeline builder Part of the Data Pipelines skill category.
Cell-free DNA analysis pipeline from plasma sequencing to tumor monitoring. Preprocesses cfDNA reads, analyzes fragment patterns, estimates tumor fraction from sWGS, and — from…
End-to-end alternative splicing analysis from FASTQ to differential splicing results for short-read bulk RNA-seq.
End-to-end biomarker discovery workflow from expression data to validated biomarker panels. Covers feature selection with Boruta/LASSO, classifier training with nested CV — from…
End-to-end ChIP-seq workflow from FASTQ files to annotated peaks. Covers QC, alignment, peak calling with MACS3 (or HOMER), and peak annotation with ChIPseeker.
End-to-end CLIP-seq pipeline from FASTQ to ENCODE-compliant binding sites, single-nucleotide crosslink maps, annotation, motifs, and (optionally) differential binding.
End-to-end copy number variant detection workflow from BAM files. Covers CNVkit analysis for exome/targeted sequencing with visualization and annotation.
End-to-end Hi-C analysis workflow from contact pairs to compartments, TADs, and loops. Covers cooler matrices, cooltools analysis, and visualization.
End-to-end workflow for detecting structural variants from long-read sequencing data. Covers ONT/PacBio alignment with minimap2 and SV calling with Sniffles or cuteSV.
End-to-end metagenomics workflow from FASTQ to taxonomic and functional profiles. Covers Kraken2 classification, Bracken abundance estimation, and HUMAnN functional profi — from…
End-to-end bisulfite sequencing workflow from FASTQ to differentially methylated regions. Covers Bismark alignment, methylation calling, and DMR detection with methylKit — from…
End-to-end multiome workflow for joint scRNA-seq + scATAC-seq analysis. Covers data loading, separate modality processing, and WNN integration with Seurat/Signac.
End-to-end neoantigen discovery from somatic variants to ranked vaccine candidates. Integrates HLA typing, MHC binding prediction, pVACtools neoantigen calling, and immun — from…
End-to-end outbreak investigation from pathogen isolates to transmission networks. Orchestrates MLST typing, AMR surveillance, phylodynamic dating, and transmission infer — from…
End-to-end single-cell RNA-seq workflow from 10X Genomics data to annotated cell types. Covers QC, normalization, clustering, marker detection, and cell type annotation — from…
End-to-end small RNA-seq analysis from FASTQ to differential miRNA expression. Use when analyzing miRNA, piRNA, or other small RNA sequencing data. — from bg-szy/TOP-SKILLS
End-to-end somatic variant calling from tumor-normal paired samples using Mutect2 or Strelka2. Covers preprocessing, variant calling, filtering, and annotation for cancer — from…
Deliver entire Epic using configurable pipeline in isolated worktrees
Build a Sui data indexer or analytics pipeline. Use when the user wants to index Sui events, build a pipeline, or query Sui RPC data.
Designs and implements ETL/ELT pipelines — extract from sources, transform/normalize, load to a warehouse — with idempotency, incremental loads, scheduling, and orchestration…
Creates Buildkite pipelines dynamically using the Buildkite REST API and pipeline upload commands. Manages agent targeting with queue tags and implements automatic retry…
Creates dynamic Buildkite pipelines using the Buildkite REST API and pipeline upload mechanism. Implements conditional step generation based on file change detection via git diff.
Summarizes active proposals by stage, expected close dates, total pipeline value, and flags proposals needing follow-up due to inactivity.
Extracts the current status of every active candidate across open roles from hiring-related email threads — where each candidate is in the process, what the next step is, and what…
Cdc Pipeline Creator - Auto-activating skill for Data Pipelines. Triggers on: cdc pipeline creator, cdc pipeline creator Part of the Data Pipelines skill category.
Manage digital assets through the Cloudinary Upload, Admin, and Transformation APIs. Automates image optimization with responsive breakpoints, AI-powered cropping via g_auto, and…
Use when when you have preprocessed mass spectrometry imaging (MSI) ion images and need to generate augmented image pairs for contrastive learning in co-localized ion discovery…
Create, update, or delete Snowplow Console resources — enrichment configuration, data quality alerts, source applications, and tracking plans.
Phase-3.6-Pipeline-Skill (T-35-A6, ADR 0034) für Sequenz-Bootstrap aus Lehrplan-Verankerung im Cowork-Mode.
Computer vision ML pipelines for image classification, object detection, semantic segmentation, and image generation.
Dagster Pipeline Creator - Auto-activating skill for Data Pipelines. Triggers on: dagster pipeline creator, dagster pipeline creator Part of the Data Pipelines skill category.
ML-pipeline discipline — every training run logged, lockfile-frozen environments, every seed pinned, the eval suite as a separate package the model never imports, a data hash per…
Data pipeline and ETL automation - extract, transform, load workflows for data integration and analytics
Designs ETL/ELT data pipelines with proper extraction, transformation, and loading patterns, including orchestration, error handling, and data quality validation.
Build data pipelines that rerun safely, backfill cleanly, and tolerate late data. Use when designing batch or streaming pipelines or fixing ones that need manual babysitting.
ETL pipelines that pull data from multiple sources (APIs, databases, web scraping), transform it, and produce
Expert data engineer for ETL/ELT pipelines, streaming, data warehousing. Activate on: data pipeline, ETL, ELT, data warehouse, Spark, Kafka, Airflow, dbt, data modeling, star…
Develop and manage data ingestion, processing, and transformation pipelines for pilot projects. Use when automating ETL workflows, integrating new data sources, or building…
Follow these patterns when implementing data pipelines, ETL, data ingestion, or data validation in OptAIC.
Process data files through transformation pipelines with validation, cleaning, and export. Use for CSV/Excel/JSON data processing, encoding handling, batch operations, and data…
Design an ETL/ELT data pipeline specification. Use when asked to design a data pipeline, spec an ETL or ELT process, document a data ingestion workflow, or plan a data…
Tracks every active real estate deal from email — where each transaction stands, what the next step is, which parties are involved, and what is stalling.
Conception de pipelines de données robustes et scalables. Se déclenche avec "data pipeline", "pipeline de données", "batch processing", "stream processing", "Apache Spark",…
Use when when you have deposited mass spectrometry imaging data in NetCDF (CDF) format paired with MATLAB workspace files (.
Generate tech news digests with unified source model, quality scoring, and multi-format output. Six-source data collection from RSS feeds, Twitter/X KOLs, GitHub releases, GitHub…
Use when you have raw Hi-C FASTQ files from a public repository (NCBI SRA, GEO, or ENCODE-deposited accession) and need to reproduce or validate Hi-C map generation following the…
Spezialfall Wasserstoff-Elektrolyseur: Foerderwege (Wasserstoffstrategie Bund, EU-Wasserstoffbank, IPCEI), Strompreisbedingungen Industrieprivileg, Anschluss Netz, Sicher — from…
Design and automate Extract, Transform, Load data pipelines for data integration and analytics
Build and manage ETL pipelines for data migration with transformation, CDC, and monitoring
Design and implement ETL pipelines for extracting, transforming, and loading data in data engineering workflows.