This skill provides a complete and streamlined workflow for performing methylation variability and epigenetic heterogeneity analysis from whole-genome bisulfite sequencing (WGBS)…
Microbiome Genomics Analysis - Analyze microbial genome: NCBI genome data, taxonomy, KEGG metabolic pathways, and annotation.
Use when when you have molecular structures (SMILES or graph formats) and need to predict a physicochemical or spectral property (e.g., infrared spectra) using a graph neural…
Generates complete Mendelian Randomization + single-cell transcriptomics (scRNA-seq) research designs from a user-provided direction.
Build, run, and debug Nextflow data pipelines and nf-core workflows end to end. Use whenever the user mentions Nextflow, nf-core, .nf files, nextflow.config, DSL2,…
Generates complete NHANES-style cross-sectional epidemiology + retrospective clinical validation research designs from a user-provided disease and biomarker direction.
中国药品权威数据库查询 — NMPA(国家药监局) + CDE(药品审评中心) + DrugBank(英文名/ATC) + PubChem(化学结构) 多源融合,提供(通用名 ↔ 商品名 ↔ 英文名 ↔ 适应症 ↔ NMPA 批文号 ↔ 上市日期)精确映射。Make sure to use this skill whenever the user…
Use this skill for "search for papers", "find citations", "look up a DOI", "get BibTeX", "download PDF", "convert PDF to markdown", "find canonical papers", "convert identifiers",…
Distill organizational design artifacts into an operational agent primer — a concise, agent-consumable AGENT-PRIMER.md encoding identity, values, boundaries, and quality standards…
Build and save a structured organizational genome — 7 markdown files across identity, decision architecture, and quality standards directories in $HOME/.ai-first-kit/ — that…
This skill should be used when the user asks to "create a packmol input", "pack molecules with packmol", "solvate a protein", "build an initial configuration", "setup molecular…
Pharmacokinetics Profile Builder - Build a PK profile: FDA pharmacokinetics, clinical pharmacology, dosage info, and molecular properties.
Find open PhD positions, funded studentships, fellowships, or labs actively recruiting students that match the applicant's profile.
Query PubChem database for chemical structures, similar compounds, and bioactivity data. Use this skill when: (1) Converting drug name to molecular structure (SMILES, SDF), (2)…
Search PubMed and retrieve structured biomedical literature with PMID lists, abstracts, MeSH terms, publication types, and PMC IDs for full-text access.
Designs QTL colocalization studies that connect eQTL, pQTL, sQTL, or related molecular QTL signals with GWAS loci.
Use when after a CNN model has generated predicted molecular embeddings from mass spectrometry data, use this skill to match those predictions against a curated reference — from…
This skill performs protein-mediated regulatory community analysis from ChIA-PET datasets and provide a way for visualizing the communities.
Use when when you need to confirm that a documented web service endpoint is deployed and accessible before using it for analysis, or when troubleshooting tool availability in a…
Embed and annotate single-cell expression data with scGPT, a foundation model for single-cell biology.
Enforce evidence-based responses for any science-related discussion. Use this skill whenever the conversation involves ANY scientific topic — including but not limited to physics,…
Access and analyze comprehensive drug information from the DrugBank database including drug properties, interactions, targets, pathways, chemical structures, and pharmaco — from…
This skill should be used when working with annotated data matrices in Python, particularly for single-cell genomics analysis, managing experimental measurements with metadata, or…
Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis.
Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis.
Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis.
This skill should be used when working with LaminDB, an open-source data framework for biology that makes data queryable, traceable, reproducible, and FAIR.
This skill should be used when working with single-cell omics data analysis using scvi-tools, including scRNA-seq, scATAC-seq, CITE-seq, spatial transcriptomics, and othe — from…
Use this skill when working with scientific research tools and workflows across bioinformatics, cheminformatics, genomics, structural biology, proteomics, and drug discov — from…
Use when after computing pairwise similarity scores across a collection of preprocessed mass spectra using matchms similarity measures (Cosine-related, molecular…
Designs complete single-cell research plans from a user-provided biomedical direction. Always use this skill whenever a user wants to design, scope, or structure a single — from…
Use when you have an ArchR project with clustered single-cell ATAC-seq cells and want to reconstruct developmental or cellular transition trajectories.
Use when when you have SMILES structures of small organic molecules and need to predict CCS values for metabolite annotation in untargeted mass spectrometry workflows.
Use when after identifying candidate parent–adduct mass-difference pairs (via massdiff, histogram binning, and adductMatch), apply this skill to discriminate true molecular…
Use when after computing pairwise similarity scores between query molecular embeddings and a reference database, apply this skill when you need to distinguish high-confidence…
This skill detects hierarchical (nested) TAD structures from Hi-C contact maps (in .cool or mcool format) using OnTAD, starting from multi-resolution .mcool files.
Use this skill when working with scientific research tools and workflows across bioinformatics, cheminformatics, genomics, structural biology, proteomics, and drug discov — from…
Use this skill when working with scientific research tools and workflows across bioinformatics, cheminformatics, genomics, structural biology, proteomics, and drug discov — from…
Rapidly maps the evidence landscape around a medical topic by organizing major research streams, target populations, endpoints, methods, evidence density, and thin areas.
Extracts concrete unmet clinical needs from guidelines, reviews, real-world studies, and clinical-practice evidence.
Generate photorealistic rendering scripts for PyMOL and UCSF ChimeraX.
Assemble genomes/metagenomes and produce assembly QC artifacts.
Cluster proteins into orthogroups and derive pangenome matrices.
Preprint server API for biology and medicine papers
PNNL cheminformatics LLM agent for molecular analysis
Automate molecular simulations with the ChemGraph agentic framework
OpenClaw bioinformatics skill library for genomics pipelines
Design clinical studies and report using CONSORT, STROBE guidelines
Clinical trial methodology, biostatistics, and study design guidance
Apply conservation biology methods, databases, and assessment tools
Workflows for RNA-seq, GWAS, and variant calling in genomic research
AI research assistant for biomedicine, RNA-seq, and drug discovery
Access FDA drug data and WHO global health statistics for research
Medical image analysis with deep learning for research applications
Molecular dynamics simulation setup, execution, and trajectory analysis
Access genomes, genes, and taxonomy data via NCBI Datasets v2 API
把北师大版初中生物的年级、册别、单元和学习场景，转成预习、同步练习、错题追练、单元复习和考前巩固等可直接执行的学习任务。把生物教材同步做成能看图、会解释、能用证据表达的学习过程。 Workflow: junior_biology_bs_textbook_sync.run.
把人教版初中生物的年级、册别、单元和学习场景，转成预习、同步练习、错题追练、单元复习和考前巩固等可直接执行的学习任务。把生物教材同步做成能看图、会解释、能用证据表达的学习过程。 Workflow: junior_biology_rj_textbook_sync.run.
把高中生物考试备考从“泛泛刷题”变成诊断、提分优先级、限时训练、错题复盘和下次复测的闭环，帮助用户知道现在最该抓什么、每天怎么练、怎么判断有没有进步。 Workflow: senior_biology_exam_review.run.
帮助生物老师把“这节课讲什么”升级为目标、活动、提问、练习和评价一致的课堂设计，重点围绕生命现象、结构功能、实验探究和图表信息提取。 Workflow: teacher_biology_lesson_planning.run.