Fetch GTEx single-tissue eQTL associations from one variant input by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query for the GTEx v2 AP — from…
Submit compact GWAS Catalog REST API v2 requests for studies, associations, SNPs, EFO traits, genes, publications, loci, and metadata.
Submit compact HMDB search requests for metabolites, proteins, diseases, and pathways. Use when a user wants concise HMDB summaries — from phamlongh230-lgtm/yamtam-engine
Submit compact IPD REST requests for HLA allele and cell-level metadata using the public IPD query API.
Map GWAS loci to ranked candidate genes using a deterministic multi-skill chain (EFO -> GWAS -> coordinates -> Open Targets L2G/coloc -> eQTL -> burden/coding context), w — from…
Submit compact MetaboLights requests for study discovery and study-level metabolomics metadata. Use when a user wants concise MetaboLights summaries — from…
Submit compact MGnify API requests for microbiome studies, samples, and biome metadata. Use when a user wants concise MGnify summaries — from phamlongh230-lgtm/yamtam-engine
Submit compact Clinical Tables NCBI Gene requests for human gene lookup, pagination, and field selection.
Submit compact NCBI Datasets v2 requests for assembly, genome, taxonomy, and related metadata endpoints.
Submit compact NCBI Entrez E-Utilities requests for PubMed, Gene, Protein, Nucleotide, PMC metadata, and GEO metadata workflows.
Submit compact NCBI PMC Open Access requests for article/file availability metadata. Use when a user wants concise PMC Open Access summaries; save raw XML only on request — from…
Submit compact Open Targets Platform GraphQL requests for target, disease, drug, variant, study, and search data, including associated-disease datasource heatmap matrices — from…
Submit compact PharmGKB API requests for genes, variants, clinical annotations, dosing guidelines, and search.
Submit compact PRIDE Archive API requests for proteomics project discovery and project-level metadata.
Submit compact ProteomeXchange PROXI requests for datasets, libraries, peptidoforms, proteins, PSMs, spectra, and USI examples.
Submit compact PubChem PUG REST requests for compound properties, descriptions, assay summaries, and substance metadata.
Submit compact QuickGO requests for GO terms, annotations, and ontology traversal. Use when a user wants concise QuickGO summaries — from phamlongh230-lgtm/yamtam-engine
Submit compact RCSB PDB requests for core metadata, Search API queries, and FASTA downloads. Use when a user wants concise RCSB summaries; save raw JSON or FASTA only on — from…
Submit compact Reactome ContentService requests for pathway, event, participant, search, and diagram-related data. Use when a user wants concise Reactome summaries
Route broad or ambiguous life-sciences research requests to the right skills, normalize core entities, optionally parallelize independent evidence gathering with subagent — from…
Submit compact Rhea reaction search requests for biochemical reactions and reaction IDs. Use when a user wants concise Rhea summaries — from phamlongh230-lgtm/yamtam-engine
Submit compact RNAcentral API requests for RNA entry browsing, single-entry lookup, and cross-reference retrieval.
Submit compact STRING API requests for network, interaction partner, and enrichment endpoints. Use when a user wants concise STRING summaries — from phamlongh230-lgtm/yamtam-engine
Fetch compact TPMI PheWAS summaries for single variants by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query.
Fetch compact UKB-TOPMed PheWAS summaries for single variants by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query.
Submit compact UniProt REST API requests for UniProtKB, UniRef, UniParc, and FASTA stream endpoints. Use when a user wants concise UniProt summaries; save raw JSON or FAS — from…
Research across Notion and synthesize into structured documentation; use when gathering info from multiple Notion sources to produce briefs, comparisons, or reports with — from…
Use when the user asks about academic literature, research papers, scholarly works, authors, citations, institutions, journals, or any academic metadata.
Intelligent search for agents. Multi-source retrieval with confidence scoring - web, academic, and Tavily in one unified API.
When the user wants to research academic papers → search ArXiv, extract PDFs, summarize/review/Q&A, generate experiment code.
Maintain or extend the local operator panel, its backend endpoints, settings UX, logs, action wiring, and operator summaries for the paper-research workspace.
Shared orchestration engine for the orch-* skill family. Defines the gated Research-Plan-TDD-Review-Commit pipeline, the size classifier, the agent map, and the two human gates…
Search the web, platforms, and datasets. Use when asked to search, find, look up, research, or discover information from the web, YouTube, Amazon, eBay, news, academic sources, or…
Supply chain investigation, evidence recovery, and forensic analysis for GitHub repositories. Covers deleted commit recovery, force-push detection, IOC extraction, multi-source…
Step 1 of the PaperOrchestra pipeline (arXiv:2604.05018). Convert (idea.md, experimental_log.md, template.tex, conference_guidelines.md) into a strict JSON outline containing a…
Sync and manage Overleaf LaTeX projects from the command line. Pull projects locally, push changes back, compile PDFs, and download compile outputs like .bbl files for arXiv…
CCNA-Lab-Tutor für Cisco Packet Tracer 9.0.0 — .pka/.pkt-Labs lesen, analysieren und erklären; eigene IOS-Configs prüfen (pt_check_lab); Übungslabs generieren (pt_generate_lab);…
Senior Paid Performance Marketer (15+ yr calibration · Google Ads + Meta Ads + LinkedIn Ads). Owns paid-channel strategy across the 4 Nexus brands (DR · NRPG · RestoreAssist ·…
GitLab Pajamas Design System expert for building UIs with Pajamas components and patterns. Use when: (1) implementing UI that should follow GitLab's Pajamas design system, (2)…
🦕 Comprehensive paleontology research toolkit (12 sub-skills): fossil occurrence queries (PBDB), scholarly literature search across CrossRef + Semantic Scholar + arXiv, research…
Analyze academic papers using the Feynman Technique. Use when you need to create a clear, structured explanation of an academic paper.
Use when converting academic papers into dissemination assets such as Paper2Web websites, Paper2Video video abstracts, or Paper2Poster conference posters from LaTeX or PDF sources.
Deep analysis of a single paper: download PDF, extract figures, generate structured 20+ section note, fill LLM placeholders.
论文分析师 (Paper Analyst) — 负责精读论文、提取方法细节、构建对比表。 当被研究主管或文献侦查员指派分析论文时激活。对 Top 20 核心论文进行结构化分析， 生成论文分析卡片和跨论文对比表。
深度分析单篇论文，生成详细笔记和评估，图文并茂 / Deep analyze a single paper, generate detailed notes with images
Transform academic papers into in-depth technical articles with multiple writing style options. Use the MinerU Cloud API for high-precision PDF parsing, automatically extracting…
Audit claims, causal chains, and conclusions in the manuscript or project design docs for scientific rigor.
Run the four paper-quality autoraters from PaperOrchestra (arXiv:2604.05018, App. F.3) — Citation F1 (P0/P1 partition + Precision/Recall/F1), Literature Review Quality (6-axis…
Generate educational comics from academic papers, using visual storytelling to explain core ideas and innovations.
Compare academic research papers side-by-side to identify similarities, differences, and research gaps.
Compile LaTeX paper to PDF, fix errors, and verify output. Use when user says \\\"\u7f16\u8bd1\u8bba\u6587\\\", \\\"compile paper\\\", \\\"build PDF\\\", \\\"\u751f\u6210PDF\\\",…
Optional narrow helper skill for README-first AI repo reproduction. Use only when the README and repository files leave a narrow reproduction-critical gap and the task is to…
证据审校器：基于 paper_notes 或来源包审查直接证据、综合判断、过度推理、benchmark/release/private data/license 风险，并生成中文 evidence_audit。需要把研究内容从“能写”提升到“写得稳”时调用。
对最终选中的论文进行深度精读，从 card.md 中提取结构化字段（sub_field、ID_paradigm、baselines 等）。当 paper-pipeline 编排流程执行到 Step 6（深度精读）时自动触发。
Create beginner-friendly deep-reading notes for journal and research paper PDFs. Use when Codex needs to learn a paper, translate it paragraph by paragraph, build an Obsidian…
論文 1 本を読み、落合フォーマット 6 項目 + 書誌情報 + 3 行 TL;DR で構造化要約する (日本語)。 Use when asked to 「この論文を要約して」「落合フォーマットで」「paper-digest」など、 輪読・サーベイ・研究の下調べで論文の構造化要約を求められたとき。
Scaffold a new arXiv paper draft at docs/arxiv/PAPER_NNN_TITLE.md with all required sections pre-filled. Usage: /paper-draft
Use this when the user wants to turn a paper-style form PDF (e.g., an Excel workbook exported as PDF, or a scanned/digital form with merged cells and presentation-heavy layout)…
Use when writing, revising, or auditing a standalone Markdown explanation of a research paper. Produces image-supported, source-verified explanations for an average reader in the…
【兼容旧入口】旧的文献扩展 skill。默认改用 literature-scout-zh：基于 context_brief 或主题问题扩展论文、benchmark、dataset page 与官方来源，并生成 evidence_map、方向聚类和支持/矛盾线索。只有兼容历史调用时才直接使用本 skill。