Call m6A peaks from MeRIP-seq IP vs input comparisons. Use when identifying m6A modification sites from methylated RNA immunoprecipitation data. — from bg-szy/TOP-SKILLS
Detect m6A modifications from Oxford Nanopore direct RNA sequencing using m6Anet. Use when analyzing epitranscriptomic modifications from long-read RNA data without…
Align and QC MeRIP-seq IP and input samples for m6A analysis. Use when preparing MeRIP-seq data for peak calling or differential methylation analysis.
Create metagene plots and browser tracks for RNA modification data. Use when visualizing m6A distribution patterns around genomic features like stop codons.
Find patterns, motifs, and subsequences in biological sequences using Biopython. Use when searching for transcription factor binding sites, regulatory elements, or any se — from…
Align RNA-seq reads with STAR (Spliced Transcripts Alignment to a Reference). Supports two-pass mode for novel splice junction discovery.
Quantify transcript expression using pseudo-alignment with Salmon or kallisto. Use when quantifying transcripts with Salmon or kallisto. — from bg-szy/TOP-SKILLS
Import transcript-level quantifications from Salmon/kallisto into R for gene-level analysis with DESeq2/edgeR using tximport or tximeta.
Process and analyze tissue images from spatial transcriptomics data using Squidpy. Extract image features, segment cells/nuclei, and compute morphological features from H — from…
Load spatial transcriptomics data from Visium, Xenium, MERFISH, Slide-seq, and other platforms using Squidpy and SpatialData.
Estimate cell type composition in spatial transcriptomics spots using reference-based deconvolution. Use cell2location, RCTD, SPOTlight, or Tangram to infer cell type pro — from…
Identify spatial domains and tissue regions in spatial transcriptomics data using Squidpy and Scanpy.
Analyze high-resolution spatial platforms like Slide-seq, Stereo-seq, and Visium HD. Use when working with subcellular resolution or high-density spatial data.
Build spatial neighbor graphs for spatial transcriptomics data using Squidpy. Compute k-nearest neighbors, Delaunay triangulation, and radius-based connectivity for downs — from…
Analyzes spatial proteomics data from CODEX, IMC, and MIBI platforms including cell segmentation and protein colocalization.
Compute spatial statistics for spatial transcriptomics data using Squidpy. Calculate Moran's I, Geary's C, spatial autocorrelation, co-occurrence analysis, and neighborho — from…
Visualize spatial transcriptomics data using Squidpy and Scanpy. Create tissue plots with gene expression, clusters, and annotations overlaid on histology images.
Transcribe DNA to RNA and translate to protein using Biopython. Use when converting between DNA, RNA, and protein sequences, finding ORFs, or using alternative codon tabl — from…
End-to-end MeRIP-seq analysis from FASTQ to m6A peaks and differential methylation. Use when analyzing epitranscriptomic m6A modifications from immunoprecipitation data.
End-to-end multi-omics integration workflow. Orchestrates data harmonization, MOFA/mixOmics integration, factor interpretation, and downstream analysis across transcripto — from…
End-to-end Ribo-seq analysis from FASTQ to translation efficiency and ORF detection. Use when analyzing ribosome profiling data to study translation. — from bg-szy/TOP-SKILLS
End-to-end spatial transcriptomics workflow for Visium/Xenium data. Covers data loading, preprocessing, spatial analysis, domain detection, and visualization with Squidpy — from…
Run Playwright smoke tests for Denser blog application. Executes 15 tests (SMOKE-01 to SMOKE-15) against configurable environment (production, dev, or localhost) with retry…
Read-only story-bible auditor for fiction series with a documented canon. Cross-references character / artifact / location mentions in chapters against the bible and flags drift.
Create, share, view, comment on, edit, and run human-in-the-loop review loops over markdown documents via Proof, the collaborative markdown editor at proofeditor.ai ("Proof…
AI-powered cell-free RNA analysis from liquid biopsy for cancer detection, tissue-of-origin identification, and non-invasive transcriptomic profiling.
Generates weekly code-review digest docs from PR review comments for any GitHub repository. If present, follows project-specific docs/review-digests/AGENTS.md guidelines.
Colloidal stability assessment skill for evaluating nanoparticle dispersion stability through zeta potential, aggregation kinetics, and shelf-life prediction
Expert assistant for creating Claude Code custom slash commands. Guides command file structure, YAML frontmatter configuration, variable syntax, and best practices.
Draft professional emails, feedback (SBI/BID), difficult conversations, meeting notes, and escalation templates.
Search and extract clips from ingested movies. Query SRT subtitles, extract video clips at timestamps, and track Horus notes on scenes.
Turn papers, podcasts, and case studies into publish-ready social posts, infographics, and diagrams. Discovers trending topics via Exa, generates content with spec-first recipes,…
Browser-based asset gallery for managing marketing assets. Visual grid with filter/search, brand context sidebar, and actions (preview, edit, generate).
Browser-based asset gallery for managing marketing assets. Visual grid with filter/search, brand context sidebar, and actions (preview, edit, generate).
Content moderation API integration using OpenAI Moderation, Perspective API, and others
Generates realistic dummy data (text, images, products) based on Shopify Schema inputs.
Orchestrator skill — turn cover metadata (title / creator / subtitle / medium) into an album / book / podcast / report / deck / magazine cover.
Orchestrates Trellis issue creation using Claude Code Agent Teams. Use when asked to "create trellis issues", "create and review issues", "create verified issues", or when you…
Erstellt professionelle, seriös-bildungsorientierte Inhalte für den Cannabis Social Club. Blog-Artikel für die CSC-Webseite und Moodle-Schulungskurse für Mitglieder.
CSI MasterFormat specification writing skill for construction document preparation
Produces a cultural intelligence dossier on a creator, brand, artist, or cultural figure — drawn from public web signal (Reddit, YouTube, news press, Wikipedia, and similar).
Internationalization (i18n) and localization (l10n) for web and mobile applications. Libraries next-intl, react-i18next, vue-i18n, formatjs, flutter_localizations, ARB.
Integration and customization of shadcn/ui (copy-paste React components, Radix + Tailwind). Trigger when the user wants to install shadcn, add components, customize the theme, or…
Create user stories with acceptance criteria, technical specifications, and UI specifications. Use when transforming feature descriptions into structured stories, generat — from…
Dynamic Light Scattering skill for hydrodynamic size distribution and polydispersity analysis
Directed Self-Assembly skill for block copolymer lithography and nanoparticle templating
Write or edit non-fiction prose — essays, popular-science chapters, longreads. Wraps `writer`; adds source-backed claims, Manson-style ironic coda, mechanism over surface, sparing…
Step 2 of Event Modeling - Arrange events chronologically in logical narrative sequence. Create timeline showing event flow and dependencies. Use after brainstorming events.
GLAW Evidence Timeline — the firm's chronology builder. From an evidence set (chats, emails, bank records, contracts, filings, deposition transcripts), it extracts every dated…
Extract clean web content as markdown using ezycopy CLI. Use when user asks to "extract this webpage", "save this article", "copy clean content from URL", "get markdown from this…
Fluorescence spectroscopy skill for quantum dot characterization, FRET measurements, and photoluminescence analysis
Write gdUnit4 test code with type-specific assertions, signal testing, and scene runner support. Use when creating or updating tests for GDScript files.
Geant4 detector simulation skill for particle transport, detector geometry, and physics process modeling
Guide for implementing Google Gemini API audio capabilities - analyze audio with transcription, summarization, and understanding (up to 9.5 hours), plus generate speech with…
Analyze videos using Google's Gemini API - describe content, answer questions, transcribe audio with visual descriptions, reference timestamps, clip videos, and process YouTube…
Use when planning git branching strategies or managing branches for development. Helps create clear development narratives through effective branch organization and workflow…
GROMACS molecular dynamics skill for nanoparticle-biomolecule interaction simulations
Piš přirozenou českou dokumentaci a opravuj strojový styl. USE WHEN user asks for Czech text, Czech documentation, README, docs, article, email, rewrite Czech text.
Expert in internationalization (i18n) and localization (l10n) with i18next, react-intl, multi-language support, RTL layouts, locale-specific formatting, translation manag — from…
Expert in internationalization (i18n) and localization (l10n) with i18next, react-intl, multi-language support, RTL layouts, locale-specific formatting, translation manag — from…