Internal guidance for composing Gemini prompts for coding, review, diagnosis, and research tasks inside the Gemini Claude Code plugin
Perform live-web research via Gemini's search-grounded answers or deep research synthesis. Use when a question involves post-training-cutoff information, library versions, CVEs,…
Delegates large-context code analysis to Gemini CLI. Use when analyzing codebases, tracing bugs across files, reviewing architecture, or performing security audits.
PROACTIVELY consult Gemini CLI for research, large codebase comprehension, and multimodal data processing.
Use when you have antiSMASH v5.0.0 BGC predictions from a set of microbial genomes and you need to integrate those predictions with GNPS metabolomic data (MS2 spectra and…
Use when you have normalized or voom-transformed gene expression counts/intensities indexed by gene and sample, along with an experimental design matrix specifying condition,…
Use when when you have raw or unnormalized gene expression data from microarray experiments (e.
Use when you have fit a linear model to normalized gene expression data (microarray intensities or RNA-seq counts) and need to test for differential expression across experimental…
Model gene-family birth-death dynamics across a species tree using CAFE5 (Mendes et al 2020 Bioinformatics 36:5516 gamma-distributed rate categories), CAFE5-error (annota — from…
Perform gene set enrichment analysis using AI research providers. Analyzes lists of genes to identify biological themes, pathways, and functional associations.
Conducts systematic internet research through strategic questioning and multi-source analysis. Gathers information from web sources (not codebase), cross-references claims across…
General-purpose agent for researching complex questions and executing multi-step tasks. Versatile problem-solver that combines research capabilities, analytical thinking, and…
Use when a user provides examples prefixed by "for example", "such as", "e.g.", "like", or ends a list with "etc." / "and so on".
Generate a markdown summary report from candidate_profile.csv with statistics and insights
Generate or edit images using AI models (FLUX, Nano Banana 2). Use for general-purpose image generation including photos, illustrations, artwork, visual assets, concept art, and…
Generate or edit images using AI models (FLUX, Gemini). Use for general-purpose image generation including photos, illustrations, artwork, visual assets, concept art, and any…
Generate comprehensive philosophy and standards documents for any domain (UX design, landing pages, email outbound, API design, etc.).
Generate a production-quality RAP OData service through deep system research, best-practice analysis, and iterative planning with user approval before any code is written.
使用 gt、kableExtra 或 flextable 生成出版级统计表格。涵盖描述性统计、 回归结果、方差分析表、相关矩阵和 APA 格式。适用于创建描述性统计表格、 格式化回归或方差分析输出、构建相关矩阵、为学术论文制作 APA 样式表格， 或为 Quarto 和 R Markdown 文档生成表格。
Generate a Quarto-based tour report with embedded maps, daily itineraries, logistics tables, and accommodation/transport details.
Generates academic/technical writeups with IEEE citations and pandoc PDF output. Use when creating research papers, technical reports, or documentation with references.
Generates complete phenotype-scoring bioinformatics research designs for any disease context and any user-defined phenotype, pathway, process, signature, or molecular pro — from…
Generates complete phenotype-scoring bioinformatics research designs for any disease context and any user-defined phenotype, pathway, process, signature, or molecular pro — from…
Use when you have raw Hi-C FASTQ files from a kilobase-resolution Hi-C experiment and need to produce a processed Hi-C contact map (.hic file) for visualization, loop calling, or…
Анализирует генетические данные пользователя из VCF файла. Используй когда пользователь спрашивает о своей генетике, наследственных признаках, предрасположенностях, метаболизме…
Use when when running metabologenomic RiPP detection pipelines (MetaMiner) on the same genomic dataset but with different input sequence formats (e.g., contigs.fasta vs.
基因组组装、注释和比较基因组 workflow skill。用于 short-read/long-read/HiFi assembly、polishing、scaffolding、BUSCO、contamination、Prokka、eukaryotic gene prediction、repeat/ncRNA/functional…
End-to-end genome assembly workflow from reads to polished assembly with QC. Supports short reads (SPAdes), long reads (Flye), and hybrid approaches.
Use when targeting Genome Biology or deciding whether a genomics or computational biology manuscript fits this venue.
Generate genome browser visualizations using pyGenomeTracks or IGV batch scripting for publication figures.
Compare your genome to George Church (PGP-1) and estimate ancestry composition via IBS and EM admixture
Use when a paired omics project JSON document contains genome identifiers (e.g. IMG IDs, NCBI accessions) but lacks corresponding organism names.
OneScience Evo2 基因组语言模型 skill。用于 Evo2 训练、推理、微调、长序列 DNA token、OpenGenome2 数据、FASTA/JSON 预处理、NeMo/Megatron batch、checkpoint 转换、variant effect 和 genome design 任务。
Use when you have filtered peak or chromatin accessibility counts and need to annotate each peak with the presence or absence of specific DNA sequence patterns—either predefined…
Use when you have assembled genomic DNA sequences (contigs in FASTA format, not antiSMASH or BOA output) and corresponding LC-MS/MS data (in MGF, mzXML, mzML, or mzData format)…
Create genome browser-style visualizations showing multiple data tracks (coverage, peaks, genes) using pyGenomeTracks, Gviz, and IGV.
Fits structural equation models to GWAS summary statistics using GenomicSEM (Grotzinger 2019), including common-factor models, confirmatory factor models, ESEM, common-fa — from…
Patterns for building robust, reproducible genomics analysis pipelines. Covers workflow managers, NGS data processing, variant calling, RNA-seq, and common bioinformatics…
Automatiza a criação de frameworks de Machine Learning (Perceptron/Softmax) para Geociências com rigor acadêmico Qualis A1.
Comprehensive geospatial science skill covering remote sensing, GIS, spatial analysis, machine learning for earth observation, and 30+ scientific domains.
Use when targeting Geophysical Research Letters (GRL) or deciding whether an Earth or space science manuscript fits this high-impact short-format venue.
Provides physics-based, data-grounded Earth science reasoning with explicit uncertainty for geology, wells, seismic, petrophysics, and subsurface analyses.
Creates detailed, sectionized implementation plans through research, stakeholder interviews, and multi-LLM review.
Creates detailed, sectionized implementation plans through research, stakeholder interviews, and multi-LLM review.
Legal research and statement drafting for German law (Deutsches Recht). Specializes in tenancy/rental law (Mietrecht), property management (Immobilienverwaltung), operating cost…
Examines git diffs between commits or branches with intelligent analysis. Provides unified diff format with comprehensive summaries including file statistics, rename detection,…
Office-hours launch and distribution help for events, projects, publications, startups, and weird campus experiments.
Bengio's GFlowNets: Generative Flow Networks that sample proportionally to reward. Diversity over maximization for causal discovery and molecule design.
Generate user demand research reports from real user feedback. Scrape and analyze feature requests, complaints, and questions from Reddit, X, GitHub, YouTube, and LinkedI — from…
Fast CLI/Python queries to 20+ bioinformatics databases. Use for quick lookups: gene info, BLAST searches, AlphaFold structures, enrichment analysis.
Fast CLI/Python queries to 20+ bioinformatics databases. Use for quick lookups: gene info, BLAST searches, AlphaFold structures, enrichment analysis.
CLI/Python toolkit for rapid bioinformatics queries. Preferred for quick BLAST searches. Access to 20+ databases: gene info (Ensembl/UniProt), AlphaFold, ARCHS4, Enrichr,…
Search GitHub for real-world code examples and implementation patterns. Use when user wants to find code examples on GitHub, search GitHub repositories, discover how others…
Search Slack for interpreted organizational context -- decisions, constraints, and discussion arcs that shape the current task.
Query a GitHub repository's star count and lines of code. Use when the user asks for repo stars, stargazers, LOC, code lines, or repository statistics for a given GitHub repo.
Safely operate a Gibbon (gibbonedu) school-management install shipped by the Clouve Gibbon app — upgrades, module installs, backups, restores, academic-year rollover, hardening,…
Create spatial visualizations and geographic analyses for historical and cultural research questions using QGIS/ArcGIS
Use when selecting or reviewing a Git branching strategy for a Salesforce project — choosing between trunk-based development, GitFlow, or environment branching, and mapping…
Execute git commit with conventional commit message analysis, intelligent staging, and message generation.
Setup and troubleshoot GitHub Actions workflows using anthropics/claude-code-action for automated PR reviews.