Generate mind map images using mind-elixir. Produces PNG or SVG files from plaintext input. Use when the user needs a mind map, concept map, or topic overview diagram.
Decompose an approved requirements summary into an implementation plan with atomic tasks, Mermaid diagrams, and a task tracker.
Generate Meta-analysis funnel plots and perform publication bias testing. Takes CSV file with Meta-analysis data as input, outputs funnel plot PNG, Egger test and Begg test…
Search and locate relevant content within a local knowledge base (files, indices, or PageIndex). Use when you need verifiable citations (file + page/paragraph) to support answers…
Access the KEGG database API to retrieve biological data (genes, pathways, compounds, drugs). Invoke when the user asks to search, list, or get details from KEGG.
Run immune pathway GSVA or ssGSEA analysis from a bulk expression matrix, a sample group file, and a local immune Reactome gene-set table, then export differential pathway results…
Classifies and organizes literature by theme, method, and conclusion; use when you need to batch-read a folder of PDF/MD/DOCX/TXT files and output a structured CSV for literature…
Fetch and save the original HTML of scientific literature webpages when given a URL, DOI, or PubMed PMID (triggered when you need archival-grade page HTML for downstream parsing…
Evidence-Based Medicine diagnostic test calculator. Computes sensitivity, specificity, PPV, NPV, likelihood ratios, NNT, and pre/post-test probability from 2x2 contingency table…
Generates a Meta-analysis results section description for funnel plots, including statistical tables (Egger's, Begg's, Trim & Fill) and figure legends.
Clinical research outcome extraction for meta-analysis. Use when users need to extract outcome measures (binary, continuous, or survival data) from clinical research papers for…
Calculate temperature excursion risks for cold chain transport. Assesses route risk, packaging suitability, and monitoring requirements for biological samples and pharmaceuticals…
Convert between IUPAC names, SMILES strings, molecular formulas, and common names for chemical compounds.
Generates complete FAERS pharmacovigilance study designs for one-drug whole-profile safety mapping using signal detection, subgroup analysis, onset/seriousness characteri — from…
Use when performing sample-level dimensionality reduction and visualization on abundance or OTU-style matrices with a companion group file, generating UMAP and/or t-SNE…
Create literature-report PPTX decks from PDF papers. Use when you must extract a paper’s metadata, summarize the study, interpret Results/Figures/Tables, and generate slides with…
Generates structured meeting minutes from text transcripts. Use when the user provides text content and wants a structured summary with a signature.
Performs epidemiological analyses including disease modeling (SIR/SEIR), outbreak investigation, risk factor identification, incidence/prevalence estimation, and causal inference…
Recommends target journals for manuscript submission by analyzing the paper topic/abstract and the journal distribution of similar PubMed literature; use when users ask for…
Generate publication-ready baseline characteristics tables (Table 1) for clinical research papers with automatic variable type detection, appropriate statistics (mean±SD,…
Parse clinical notes and recommend ICD-10-CM diagnosis codes and CPT procedure codes with confidence scoring.
Retrieve the latest journal issue's table of contents and abstracts from URL/DOI/PMID/RSS/TOC sources, then generate Chinese key points locally (no external translation APIs) when…
Organize study notes into a structured knowledge-point outline and export to a .docx summary when you need a shareable, hierarchical document from Word/PPT/Text/Markdown inputs.
Track manuscript resubmission deadlines and automatically generate phase-appropriate task breakdowns for academic researchers based on remaining time.
Automatically detect DOCX track-changes history, version rounds, and author feedback to generate a Markdown modification explanation file when you run it on one or more DOCX…
Automatically convert uploaded drug application documents (Word/PDF) into XML skeleton structure compliant with eCTD 4.0/3.2.2 specifications.
Generates complete dual-disease transcriptomic + machine learning research designs from a user-provided disease pair.
Identifies the real underlying study design used in a medical or biomedical paper, distinguishes primary and secondary design components when papers are hybrid, and converts the…
Draft IACUC protocol applications with focus on the 3Rs principles justification.
Assists researchers in generating PROSPERO registration content for meta-analyses from a title and optional protocol. Use when the user wants to draft a PROSPERO registration form.
Automatically identify Western Blot gel bands, perform densitometric analysis, and calculate normalized values relative to loading controls.
Track lab equipment calibration dates and send maintenance reminders for pipettes, balances, centrifuges, and other instruments.
Use facs gating viz style for data analysis workflows that need structured execution, explicit assumptions, and clear output boundaries.
Local schedule management for adding events, tracking deadlines, generating reminders, and detecting time conflicts when users need offline scheduling with optional popup…
Use when filtering genes with high missingness and then imputing missing values in a bulk expression matrix with group-aware KNN through `DMwR2`, where donor samples are…
Use figure reference checker for academic writing workflows that need structured execution, explicit assumptions, and clear output boundaries.
Analyzes research hotspots and recommends literature based on a disease or topic. Use when the user wants to identify current research trends, hot topics, or get literature…
Converts existing manuscript content into LaTeX format aligned with a target journal, conference, or template while preserving manuscript meaning and structural integrity.
Generates a weekly academic literature report based on keywords using PubMed. Use when the user wants to track recent research progress on a specific topic, automatically…
Use when building a ceRNA regulatory network from a key gene list by combining bundled miRNA-mRNA and miRNA-lncRNA database files, with flat-file CSV exports and PDF visualization…
Generates complete comorbidity-oriented shared-biomarker bioinformatics research designs from a user-provided disease pair and validation direction.
Builds prioritized manuscript revision plans for major or minor revisions by separating comments that require experiments, analyses, clarification, restructuring, or wording…
Generates complete conventional single-gene oncology research designs from a user-provided cancer context, target gene, and validation direction.
Process images for web development — resize, crop, trim whitespace, convert formats (PNG/WebP/JPG), optimise file size, generate thumbnails, create OG card images.
Generates a meta-analysis baseline characteristics section (text + table) from raw data. Supports Chinese and English.
Download PubMed/PMC literature using officially permitted PMC methods. Whenever the user wants to download PMC full text, batch-retrieve PMC Open Access Subset articles, save full…
Use medical translation for academic writing workflows that need structured execution, explicit assumptions, and clear output boundaries.
Monitor and summarize competitor clinical trial status changes from ClinicalTrials.gov.
Unified tool for calculating sample sizes for Diagnostic, Efficacy, Etiology, and Prognosis clinical studies.
Generate leave-one-out sensitivity analysis plots for meta-analysis. Input is a CSV file containing meta-analysis data; outputs are a sensitivity forest plot (PNG) and a…
Generate tailored AI-focused cover letters using the PSI (Problem-Solution-Impact) methodology. Use when: (1) User wants to create cover letters for AI/ML job applications, (2)…
Access ChEA3 and Harmonizome ChEA data for transcription factor enrichment analysis and metadata retrieval.
A multi-stage workflow for writing long-form medical reviews; used when the user needs to build an outline based on PubMed literature, write chapter by chapter, perform…
Generates a full expert interview article including introduction, Q&A body, and summary based on interview questions and expert background.
Assesses whether a medical research topic is worth starting now by separating true novelty from pseudo-novelty, auditing real feasibility under stated resource constraints, and…
Design a structured case-control study framework with explicit source population logic, control selection rules, matching decisions, exposure measurement planning, and…
Use grant gantt chart gen for evidence insight workflows that need structured execution, explicit assumptions, and clear output boundaries.
Access ENCORI (StarBase) database for miRNA-target, RNA-RNA, and other regulatory data. Invoke when user asks to search ENCORI or retrieve regulatory interactions.
Sequence alignment and alignment file processing with Biopython (Bio.Align/Bio.AlignIO), triggered when you need global/local pairwise alignment, MSA read/write/format conversion,…
Analyzes academic paper abstracts to recommend optimal journals for submission, considering impact factors, scope alignment, and domain expertise.