Generate mind map images using mind-elixir. Produces PNG or SVG files from plaintext input. Use when the user needs a mind map, concept map, or topic overview diagram.
Decompose an approved requirements summary into an implementation plan with atomic tasks, Mermaid diagrams, and a task tracker.
Extract experimental models, experimental methods, and biomarker information from paper Markdown (typically produced by PDF-to-Markdown tools) when a user provides paper Markdown…
Generate tailored AI-focused cover letters using the PSI (Problem-Solution-Impact) methodology. Use when: (1) User wants to create cover letters for AI/ML job applications, (2)…
Expert system for generating comprehensive biomedical phenotype introductions with structured academic content.
Use grant gantt chart gen for evidence insight workflows that need structured execution, explicit assumptions, and clear output boundaries.
Quickly judges whether a biomedical paper is worth deep reading by screening for question fit, design quality, sample adequacy, methodological novelty, and reproducibility value.
Use when performing sample-level dimensionality reduction and visualization on abundance or OTU-style matrices with a companion group file, generating UMAP and/or t-SNE…
Access the OpenAlex database (240M+ scholarly works) for bibliometric analysis, literature search, and citation tracking; use when you need to query…
Kaplan-Meier survival analysis tool for clinical and biological research. Generates publication-ready survival curves with statistical tests.
Use when analyzing biotech patent landscapes, identifying white spaces in pharmaceutical IP, tracking competitor patents, or assessing freedom to operate for drug development.
Generates a comprehensive research proposal design based on input literature, including hypothesis, mechanism verification, and budget.
Generates a patient-friendly medical case report tweet from case images and disease name. Use when the user provides a medical case image and wants a structured report or tweet.
Automated bias assessment for diagnostic accuracy studies using QUADAS-C criteria. Requires full text input.
Intelligent medical abbreviation disambiguation tool that resolves ambiguous acronyms using clinical context, specialty-specific knowledge, and document-level semantic analysis.
Use blind-review-sanitizer for academic writing workflows that need structured anonymization, explicit assumptions, and clear output boundaries for double-blind submission.
Use when identifying stable sample subtypes from bulk expression matrices with ConsensusClusterPlus, including PAC-based model selection and consensus matrix/CDF visualization.
Plan cross-time-zone meeting windows for distributed teams, providing region-by-region local time mappings and tradeoff analysis for scheduling decisions.
Convert research paper PDFs into literature-report PPTX decks using a fully offline workflow (extract text/figures, map captions, summarize findings, and generate slides).
Use market access value for academic writing workflows that need structured execution, explicit assumptions, and clear output boundaries.
Analyze data with `phylogenetic-tree-styler` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.
Batch extracts and verifies structured information (PMID, title, abstract, methodology, results, etc.) from clinical research literature using PMIDs.
Automatically convert uploaded drug application documents (Word/PDF) into XML skeleton structure compliant with eCTD 4.0/3.2.2 specifications.
Precision editing tool that reduces abstract word count through intelligent compression techniques, maintaining scientific rigor while meeting strict journal and conference…
Analyzes the feasibility of a proposed Meta-analysis topic by searching for existing Meta-analyses and Clinical Trials on PubMed/ClinicalTrials.gov.
Builds prioritized manuscript revision plans for major or minor revisions by separating comments that require experiments, analyses, clarification, restructuring, or wording…
Use when generating Kaplan-Meier survival curves from tabular survival data containing time, event status, and a precomputed risk group.
Generates a full expert interview article including introduction, Q&A body, and summary based on interview questions and expert background.
Generate R/Python code for volcano plots from DEG (Differentially Expressed Genes) analysis results. Triggered when user needs visualization of gene expression data, p-value vs…
Automated generation of baseline characteristics tables (Table 1) for clinical research papers.
Use outlier detection handler for data analysis workflows that need structured execution, explicit assumptions, and clear output boundaries.
Track manuscript resubmission deadlines and automatically generate phase-appropriate task breakdowns for academic researchers based on remaining time.
Recommend academic journals based on manuscript topic, abstract, and impact factor expectations. Use when the user wants to find suitable journals for their research manuscript,…
Extracts clinical trial baseline data (study, region, participants, etc.) from article text or PMID. Checks PubMed for metadata; always falls back to LLM extraction for full…
Use when identifying seminal papers in a research field, mapping research lineage and intellectual heritage, discovering related work through reference tracking, or finding…
Generate popular science short video scripts based on topic, duration, and style. Invoke when the user needs to create scripts for short science videos.
Analyze data with `metagenomic-krona-chart` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.
Turns reviewer comments into structured, professional point-by-point responses linked to manuscript revisions, clarifications, rebuttals, and additional analyses.
Use semantic consistency auditor for academic writing workflows that need structured execution, explicit assumptions, and clear output boundaries.
Use when screening differentially expressed genes from a bulk expression matrix between two user-specified groups, producing DEG tables, a volcano plot, and a clustered heatmap.
Use biotech-pitch-deck-narrative for academic writing workflows that need structured investor-facing storytelling, explicit assumptions, and clear output boundaries.
Run immune pathway GSVA or ssGSEA analysis from a bulk expression matrix, a sample group file, and a local immune Reactome gene-set table, then export differential pathway results…
Access the HGNC (HUGO Gene Nomenclature Committee) database to search for and retrieve gene information including symbols, names, IDs, and other metadata.
Access Scite.ai Smart Citations to classify how a paper is cited (supporting, contrasting, mentioning) and assess scientific claims; use it when you need to evaluate a paper’s…
Analyze data with `forest-plot-styler` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.
Advanced Biopython modules for motifs, population genetics, sequence utilities, restriction analysis, clustering, and GenomeDiagram visualization; use when you need extended…
Use Bio.Entrez to access NCBI databases (e.g., PubMed/GenBank) for searching, fetching summaries, and downloading records when your workflow needs to call the NCBI E-utilities API…
Analyze data with `toxicity-structure-alert` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.
Use when you need a standardized R CLI workflow to build a protein-protein interaction network from a local gene list and an offline STRING cache, export node and edge tables, and…
Clinical research outcome extraction for meta-analysis. Use when users need to extract outcome measures (binary, continuous, or survival data) from clinical research papers for…
Extract experimental materials and instrument information from PDFs (or PDF-derived text/Markdown) into three CSV tables; use when a paper/report contains sections like Materials…
Converts a biomedical study storyline into a graphical abstract and, when direct image capability is available, generates the graphical abstract directly; otherwise it falls back…
Sort laboratory chemicals into safe storage groups by hazard classification (acids, bases, oxidizers, flammables, toxics).
A biomedical research topic designer that generates progressive experimental subtitles and detailed research outlines based on a given subject.
Use medical cv resume builder for academic writing workflows that need structured execution, explicit assumptions, and clear output boundaries.
Check whether a paper’s Methods section contains all information needed for replication; use when preparing a manuscript for submission or reviewing methodological completeness.
Use when training a LightGBM model on tabular data in R and returning model metrics, feature importance ranking tables, and feature importance plots.
Assesses whether a medical research topic is worth starting now by separating true novelty from pseudo-novelty, auditing real feasibility under stated resource constraints, and…
1. Confirm the user objective, required inputs, and non-negotiable constraints before doing detailed work. 2.
Plans sample size estimation logic, power assumptions, feasibility checks, and fallback enrollment strategies for clinical and translational study protocols.