Submit compact ChEBI 2.0 API requests for chemical search, compound lookup, ontology traversal, and structure metadata. Use when a user wants concise ChEBI summaries
Submit compact ChEMBL API requests for activity, molecule, target, mechanism, and text-search endpoints. Use when a user wants concise ChEMBL summaries
Submit compact CIViC GraphQL requests for cancer variant interpretation schema inspection and targeted evidence retrieval. Use when a user wants concise CIViC summaries
Submit compact ClinicalTrials.gov API v2 requests for study search, metadata, enums, search areas, and field statistics. Use when a user wants concise ClinicalTrials.gov summaries
Submit compact ClinVar Clinical Tables and NCBI Variation requests for search, VCV, RCV, SCV, and RefSNP lookups.
Submit compact EFO OLS4 requests for search, term lookup, children, and descendants. Use when a user wants concise EFO resolution or ontology-expansion summaries
Submit compact ENCODE REST API requests for object lookups, portal-style search, and metadata retrieval. Use when a user wants concise ENCODE summaries
Submit compact Ensembl REST API requests for lookup, overlap, cross-reference, and variation endpoints. Use when a user wants concise Ensembl summaries
Submit compact EpiGraphDB API requests for ontology, literature, MR, gene-drug, and support-path evidence. Use when a user wants concise EpiGraphDB summaries
Submit compact eQTL Catalogue API requests for association retrieval and documented metadata endpoints.
Submit compact EVA REST requests for species metadata and archived variant lookups. Use when a user wants concise European Variation Archive summaries
Fetch compact FinnGen PheWAS summaries for single variants by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query.
Submit compact Genebass gene burden requests for one Ensembl gene ID and one burden set. Use when a user wants concise Genebass PheWAS summaries — from…
Submit compact gnomAD GraphQL requests for frequency, gene constraint, and variant context queries. Use when a user wants concise gnomAD summaries
Fetch GTEx single-tissue eQTL associations from one variant input by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query for the GTEx v2 API.
Submit compact GWAS Catalog REST API v2 requests for studies, associations, SNPs, EFO traits, genes, publications, loci, and metadata.
Submit compact HMDB search requests for metabolites, proteins, diseases, and pathways. Use when a user wants concise HMDB summaries
Submit compact Human Protein Atlas requests for gene JSON, search downloads, and page-level tissue or cell-line lookups.
Submit compact IPD REST requests for HLA allele and cell-level metadata using the public IPD query API.
Map GWAS loci to ranked candidate genes using a deterministic multi-skill chain (EFO -> GWAS -> coordinates -> Open Targets L2G/coloc -> eQTL -> burden/coding context), with…
Submit compact MetaboLights requests for study discovery and study-level metabolomics metadata. Use when a user wants concise MetaboLights summaries
Submit compact MGnify API requests for microbiome studies, samples, and biome metadata. Use when a user wants concise MGnify summaries
Submit, poll, and summarize NCBI BLAST Common URL API jobs (Blast.cgi) for nucleotide or protein sequences.
Submit compact Clinical Tables NCBI Gene requests for human gene lookup, pagination, and field selection. Use when a user wants concise autocomplete-style human gene search results
Submit compact NCBI Datasets v2 requests for assembly, genome, taxonomy, and related metadata endpoints.
Submit compact NCBI Entrez E-Utilities requests for PubMed, Gene, Protein, Nucleotide, PMC metadata, and GEO metadata workflows.
Submit compact NCBI PMC Open Access requests for article/file availability metadata. Use when a user wants concise PMC Open Access summaries; save raw XML only on request.
Submit compact Open Targets Platform GraphQL requests for target, disease, drug, variant, study, and search data, including associated-disease datasource heatmap matrices.
Submit compact PharmGKB API requests for genes, variants, clinical annotations, dosing guidelines, and search.
Submit compact PRIDE Archive API requests for proteomics project discovery and project-level metadata. Use when a user wants concise PRIDE summaries
Submit compact ProteomeXchange PROXI requests for datasets, libraries, peptidoforms, proteins, PSMs, spectra, and USI examples. Use when a user wants concise PROXI summaries
Submit compact PubChem PUG REST requests for compound properties, descriptions, assay summaries, and substance metadata. Use when a user wants concise PubChem summaries
Submit compact QuickGO requests for GO terms, annotations, and ontology traversal. Use when a user wants concise QuickGO summaries
Submit compact RCSB PDB requests for core metadata, Search API queries, and FASTA downloads. Use when a user wants concise RCSB summaries; save raw JSON or FASTA only on request.
Submit compact Reactome ContentService requests for pathway, event, participant, search, and diagram-related data. Use when a user wants concise Reactome summaries
Route broad or ambiguous life-sciences research requests to the right skills, normalize core entities, optionally parallelize independent evidence gathering with subagents when…
Submit compact Rhea reaction search requests for biochemical reactions and reaction IDs. Use when a user wants concise Rhea summaries
Submit compact RNAcentral API requests for RNA entry browsing, single-entry lookup, and cross-reference retrieval. Use when a user wants concise RNAcentral summaries
Submit compact STRING API requests for network, interaction partner, and enrichment endpoints. Use when a user wants concise STRING summaries — from phamlongh230-lgtm/yamtam-engine
Fetch compact TPMI PheWAS summaries for single variants by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query.
Fetch compact UKB-TOPMed PheWAS summaries for single variants by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query.
Submit compact UniProt REST API requests for UniProtKB, UniRef, UniParc, and FASTA stream endpoints. Use when a user wants concise UniProt summaries; save raw JSON or FASTA only…
Prepare meeting materials with Notion context and Codex research; use when gathering context, drafting agendas/pre-reads, and tailoring materials to attendees.
Research across Notion and synthesize into structured documentation; use when gathering info from multiple Notion sources to produce briefs, comparisons, or reports with — from…
Use when the user asks to create, scaffold, or edit Jupyter notebooks (`.ipynb`) for experiments, — from luokai0/ai-agent-skills-by-luo-kai
Use when the user asks about academic literature, research papers, scholarly works, authors, citations, institutions, journals, or any academic metadata.
Generate publication-quality academic diagrams, methodology figures, architecture illustrations, and statistical plots from text descriptions using the PaperBanana multi-agent AI…
Intelligent search for agents. Multi-source retrieval with confidence scoring - web, academic, and Tavily in one unified API.
Equip your agent with Sulcus — thermodynamic memory with a knowledge graph. Full SIU pipeline: SIVU (quality gate) → SICU (classifier) → SILU (entity extraction) → SIRU (adaptive…
YouTube SERP Scout for agents. Search top-ranking videos, channels, and trends for content research and competitor tracking.
Query the OpenData API for data research and analysis. Use when fetching dataset rows, filtering, sorting, aggregating, inspecting columns, composing cross-dataset joins,…
evaluating open deviation bar signal quality, computing Sharpe ratios with non-IID bars, running PSR/DSR/MinTRL statistical tests, or assessing.
Execute OpenEvidence secondary workflow: DeepConsult Research Synthesis. Trigger: "openevidence deepconsult research synthesis", "secondary openevidence workflow".
Build custom LLM evaluation pipelines using the OpenJudge framework. Covers selecting and configuring graders (LLM-based, function-based, agentic), running batch evaluations with…
When the user wants to research academic papers → search ArXiv, extract PDFs, summarize/review/Q&A, generate experiment code.
Archive a completed change in the experimental workflow. Use when the user wants to finalize and archive a change after implementation is complete.
Start a new OpenSpec change using the experimental artifact workflow. Use when the user wants to create a new feature, fix, or modification with a structured step-by-step approach.
Fetch and search a dependency's real source before answering, not guessing. Use when checking what a third-party package (npm, PyPI, NuGet, crate, GitHub repo) actually does.
Use when targeting Operations Research (OR) or deciding whether an optimization / stochastic-models / queueing / applied-mathematical-modeling manuscript fits this venue.
Maintain or extend the local operator panel, its backend endpoints, settings UX, logs, action wiring, and operator summaries for the paper-research workspace.