Interact with the Paperclip control plane API to manage tasks, coordinate with other agents, and follow company governance.
Use when the user wants to create or update a Chinese deep paper note by driving the external paperflow repository and a local research-notes workspace.
Search academic literature via arXiv, Semantic Scholar, and open-access discovery chains. Fetches and parses PDFs for key findings.
Skill for academic research workflows: search Semantic Scholar (200M+ papers), inspect citations, download arXiv PDFs, and extract PDF text. Bundles a self-contained Python CLI.
Manage PARA-based personal knowledge management (PKM) systems using Projects, Areas, Resources, and Archives organization method.
Deep research using Parallect.ai (hosted) + prxhub. Before spending compute, search prxhub's public registry for existing research on the topic (free, no account).
Optional vendor skill for Parallel CLI — agent-native web search, extraction, deep research, enrichment, FindAll, and monitoring. Prefer JSON output and non-interactive flows.
Decompose a task into independent concerns and execute them through broadly parallel, specialized agent groups.
Loop 2 of the Three-Loop Integrated Development System. META-SKILL that dynamically compiles Loop 1 plans into agent+skill execution graphs.
Search the web, extract URL content, and run deep research using the Parallel Chat API and Extract API.
Explore and optimize simulation parameters via design of experiments (DOE), sensitivity analysis, and optimizer selection — generate Latin Hypercube, quasi-random, or factorial…
Use when you have at least 3 raw mass spectrometry samples in open formats (mzML, mzXML, CDF) from untargeted metabolomics experiments and need to configure parameters for XCMS,…
Declarative hyperparameter management for ML/AI experiments. Use when Claude needs to: (1) Create CLI applications with type-hinted parameters and auto-generated help (2)…
Use when you have peak intensity vectors from LC/GC-MS experiments with corresponding QC (quality control) sample measurements, and you need to correct for batch…
Reads and transforms Apache Parquet file metadata and column statistics using PyArrow and the Parquet Thrift specification.
Profiles Apache Parquet files using pyarrow metadata APIs to extract column statistics, row group distributions, and encoding efficiency metrics without reading full datasets.
Proactively analyzes Parquet file operations and suggests optimization improvements for compression, encoding, row group sizing, and statistics.
Document parsing skill for extracting content from PDFs and other academic documents using MinerU and local parsers
주제 텍스트를 받아 핵심 검색 쿼리를 자동 생성하고, 웹 검색으로 수집한 정보를 슬라이드 제작에 적합한 구조화된 데이터로 정리합니다. 출처, 수치, 사실, 인용구를 구분하여 태깅하고 내용 신뢰도를 평가합니다. 사용 시점: ContentIngestAgent가 웹 리서치 요청을 처리할 때 호출합니다.
Research a piece of gear by ingesting web sources (Equipboard, Reddit, articles, YouTube) into the per-gear knowledge store via a tiered fetch ladder.
📜 专利专业代理 - Patent Professional Agents 一个专业的多代理专利撰写与优化技能套件，覆盖专利申请全流程。 🎯 核心功能： • 场景一：用户想法 → 技术挖掘 → 检索分析 → 专利撰写 → 质量审核 • 场景二：用户初稿 → 问题分析 → 优化建议 → 强化权利要求 • 场景三：代理机构反馈 → 风险评估 → 优化/取消建议…
Patent Search Skill powered by Patsnap's free MCP. Covers novelty search, FTO analysis, patent mining, risk screening, invalidation search, competitive intelligence, legal status…
Plant technische Expertenarbeit in Patentverfahren: Privatgutachten, gerichtliche Sachverständige, Parteigutachten, Experimente, Reproduzierbarkeit, Befragung und…
Use when when you have an untargeted metabolomics feature table (m/z values, retention times, intensity measurements, and p-values from statistical testing) and want to p — from…
Use when after marker identification or metabolite annotation has produced a curated list of compound IDs (e.g., KEGG IDs or CAS numbers) and you need to determine which metabolic…
Use when you have run a metabolomics experiment with incomplete coverage of a reference pathway database (e.g., 10–100% of database metabolites detected), and you plan to use ORA…
Use when when preparing to run ORA on a metabolomics study: you have a list of detected metabolites from your experiment and need to determine which metabolites from the full…
Use when you have a preranked gene list (e.g., genes sorted by log2 fold-change, t-statistic, or other continuous metric) and a collection of gene sets or biological pathways, and…
Generates comprehensive academic introductions for biological pathways, including signaling processes, markers, and inhibitors.
Use when you have a metabolite intensity matrix (samples × metabolites) with assigned annotations (peak IDs mapped to KEGG or ChEBI compound IDs), a metabolic pathway database,…
Use when after peak annotation when you have: (1) a peak intensity matrix (rows=peaks with KEGG/ChEBI/UniProt IDs, columns=samples) with group labels; (2) a pathway database…
Use when you have normalized gene expression data (log-transformed, quantile-normalized) from a time-course or case-control experiment, a ranked gene statistic (e.g., mean…
What patterns keep showing up across unrelated contexts? - Consult and apply the pattern library: behavioral patterns (vasanas) that persist across domains — analysis, argument,…
Conjecture generation, sequence analysis, and experimental mathematics for mathematical discovery. Covers sequence analysis (OEIS lookups, recurrence relations, generating…
Guide for creating generative, emergent music with Pattrns, the Lua-based pattern sequencing engine for Renoise.
Investigate runtime content-hiding and paywall reveal mechanics for lawful archival capture. Use when tracing script/network/DOM paths that determine final visible article text…
AI-powered paywall optimizasyon. Sektore gore otomatik analiz, A/B test senaryolari, churn prediction sinyalleri, push notification stratejileri, agresif satis teknikleri ve…
Access RCSB PDB for 3D protein/nucleic acid structures. Search by text/sequence/structure, download coordinates (PDB/mmCIF), retrieve metadata, for structural biology and — from…
Use when you want to search for or download experimentally-determined 3D structures for biomolecules (proteins, nucleic acids, bound ligands).
Access RCSB PDB for 3D protein/nucleic acid structures. Search by text/sequence/structure, download coordinates (PDB/mmCIF), retrieve metadata, for structural biology and — from…
Extract experimental materials and instrument information from PDFs (or PDF-derived text/Markdown) into three CSV tables; use when a paper/report contains sections like Materials…
Use PDF Vector public APIs for document, invoice, identity, bank statement, and academic workflows, including parsing, ask, extract, search, citations, paper graphs, similar…
Use when after peak detection and before any comparative analysis (e.g., diversity indices, ordination, or statistical testing) when working with direct injection FT-ICR MS data…
Use when you have two related compounds (a known reference and its structural analog with unknown modification site), baseline peak annotations from cosine alignment, and newly…
Use when converting raw MS/MS spectra from library files (e.g., .msp format) into structured library entries, or when annotating experimental LC–MS features against fragment…
Use when you have raw LC-MS/MS spectra from vendor instruments (mzML, mzXML, MGF, or MSP format) with variable peak quality and intensity distributions, and you plan to perform…
Use when after peak detection and clustering have been completed on aligned and baseline-corrected GC-IMS data, and before imputation or statistical analysis.
Use when after molecular formula assignment and peak filtering are complete, when you have a filtered peak list (m/z values and molecular formulas) and want to discover…
Use when you have centroided high-resolution Orbitrap or GC-CI-MS mzML files and a formulaTable of target compounds with known m/z, retention time, and molecular formula, and you…
Use when you have completed XCMS preprocessing (getEIC() and fillPeaks()) on untargeted LC-MS metabolomics data and need to assign per-peak quality scores prior to manual…
Use when when you have loaded aligned peak-alignment data from a molecular networking task and need to distinguish high-confidence, reproducible peak alignments from noise or…
Use when after applying cluster-based filtering with quasi-molecular adducts and frequency thresholds on candidate metabolites from KEGG matching.
Use when after applying cluster-based filtering with quasi-molecular adduct constraints and frequency thresholds on LC-MS feature candidates, when some peaks have been entirely…
Use when after generating a peak table from XCMS peakTable() output in an untargeted LC-MS metabolomics workflow, if your experimental design includes quality control (QC) samples…
Use when when you have extracted peak tables from multiple independent LC/HRMS analysis batches (each with retention time and m/z values) and need to align peaks across batches to…
Structured manuscript/grant review with checklist-based evaluation. Use when writing formal peer reviews with specific criteria methodology assessment, statistical validi — from…
Structured manuscript/grant review with checklist-based evaluation. Use when writing formal peer reviews with specific criteria methodology assessment, statistical validi — from…
Structured peer review of manuscripts and grants. 7-stage evaluation: initial assessment, section review, statistical rigor, reproducibility, figure integrity, ethics, writing.
Use when reviewing an assembled paper draft for ML or computational biology venues. Covers persona calibration (overworked, not-nice senior reviewer), 5-step process (first-pass…
Hardware-agnostic quantum ML framework with automatic differentiation. Use when training quantum circuits via gradients, building hybrid quantum-classical models, or need — from…