Reviews scientific documents for logical clarity, argument soundness, and rigor by auditing hypothesis-data alignment, claim-evidence chains, quantitative precision, hedging…
Produces a structured assessment of the current scientific consensus on a specific topic — distinguishing between what is well-established, what is actively debated, and what is…
Always Auto-invoked skill that creates/updates workspace AGENTS.md to instruct the agent to always search for existing skills before attempting any scientific task.
Evaluate scientific claims and evidence quality. Use for assessing experimental design validity, identifying biases and confounders, applying evidence grading frameworks — from…
Evaluate scientific claims and evidence quality. Use for assessing experimental design validity, identifying biases and confounders, applying evidence grading frameworks — from…
⚠️ CRITICAL USER EXPERIENCE-BASED SKILL - ALWAYS CONSULT BEFORE DATA PREPROCESSING ⚠️ Prevents catastrophic errors (88.9% error rate in V1.0 case study) through multi-level…
Pythonic wrapper around RDKit with simplified interface and sensible defaults. Preferred for standard drug discovery including SMILES parsing, standardization, descriptor — from…
Access Human Metabolome Database (220K+ metabolites). Search by name/ID/structure, retrieve chemical properties, biomarker data, NMR/MS spectra, pathways, for metabolomic — from…
Direct PubMed and NCBI E-utilities search workflows for biomedical literature, MeSH queries, PMID lookup, citation retrieval, and API-backed literature monitoring.
USPTO patent and trademark data workflow for official record lookup, PatentSearch queries, TSDR checks, assignment data, and reproducible IP research logs.
Use when targeting 《科学决策》(Scientific Decision Making — 中国航天系统科学与工程研究院等主办的决策科学月刊) or deciding whether a Chinese decision-science/policy-evaluation manuscript fits this venue.
Diffusion-based molecular docking. Predict protein-ligand binding poses from PDB/SMILES, confidence scores, virtual screening, for structure-based drug design.
Defensive exploratory data analysis for scientific data (CSV, FASTA, etc.). Context-first, human-guided; one plot at a time, ask why before executing, append-only journal per…
Build and operate the "Scientific Hypothesis Prioritization for legal and policy workflows" capability for legal and policy workflows.
Assess paper and journal impact using OpenAlex citation counts, optional Altmetric data, and curated journal impact-factor references.
Latch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy serverless workflows, LatchFile/LatchDir, Nextflow/Snakema — from…
Produces a structured, plain-language briefing on the state of scientific research for a given topic — summarising what is established, what is contested, and what remains unknown.
Systematic strategies for searching scientific literature across PubMed, arXiv, Google Scholar, and AI-assisted tools.
Use when targeting 《科学管理研究》(Scientific Management Research — 内蒙古自治区软科学研究会主办的科学管理/科技政策双月刊) or deciding whether a Chinese S&T-management/policy manuscript fits this venue.
High-impact scientific manuscript preparation for journals like Nature, Blood, Cell. Use when writing abstracts, introductions, methods, results, discussions, or figure legends.
Scientific manuscript writing: IMRAD, citation styles (APA/AMA/Vancouver/IEEE), figures/tables, reporting guidelines (CONSORT/STROBE/PRISMA/ARRIVE), writing principles…
The scientific method as an epistemological framework for producing reliable knowledge. Covers observation, question formation, hypothesis construction, experimental testing, data…
Molecular featurization for ML (100+ featurizers). ECFP, MACCS, descriptors, pretrained models (ChemBERTa), convert SMILES to features, for QSAR and molecular ML.
Neuropixels neural recording analysis. Load SpikeGLX/OpenEphys data, preprocess, motion correction, Kilosort4 spike sorting, quality metrics, Allen/IBL curation, AI-assis — from…
Summarises a scientific paper in plain language — covering the research question, methodology, key findings, limitations, and implications — so a journalist can accurately report…
gget CLI and Python workflow for quick genomic database queries, sequence lookup, BLAST-style searches, enrichment checks, and reproducible bioinformatics evidence logs.
Complete mass spectrometry analysis platform. Use for proteomics workflows feature detection, peptide identification, protein quantification, and complex LC-MS/MS pipelin — from…
Therapeutics Data Commons. AI-ready drug discovery datasets (ADME, toxicity, DTI), benchmarks, scaffold splits, molecular oracles, for therapeutic ML and pharmacological — from…
Write research/technical reports with strong structure + figure standards. Supports Markdown/HTML/PDF outputs (Quarto optional), executive summary, methods, results, discussion,…
Use for scientific or scholarly research with source traceability, literature reviews, paper discovery, arXiv/OpenAlex/Crossref/Europe PMC/Semantic Scholar/PubMed queries, corpus…
Create publication-quality scientific diagrams using Nano Banana 2 AI with smart iterative refinement. Uses Gemini 3.1 Pro Preview for quality review.
Create publication-quality scientific diagrams using Nano Banana Pro AI with smart iterative refinement. Uses Gemini 3 Pro for quality review.
Build slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentations, seminar talks, research presentations, thesis def — from…
Biological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FASTA/Newick I/O, for m — from…
Build slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentations, seminar talks, research presentations, thesis def — from…
Build slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentations, seminar talks, research presentations, thesis def — from…
Statistical models library for Python. Use when you need specific model classes (OLS, GLM, mixed models, ARIMA) with detailed diagnostics, residuals, and inference.
Create or substantially refine publication-grade scientific and technical SVG figures for reports, slides, README/docs, and DOCX/PDF workflows.
Use when you are starting a new mass spectrometry analysis task or feature request where the problem scope is unclear, the tool chain (e.g., OpenMS + Python + KNIME integration)…
Bilimsel metod, hipotez, kanıt değerlendirme, bias analizi. ⚠️ Araştırma/analiz için kullan. Mimari karar için → ultrathink-core.
Systematic literature-review workflow for academic, biomedical, technical, and scientific topics, including search planning, source screening, synthesis, citation checks, and…
Structured scholarly-work evaluation for papers, proposals, literature reviews, methods sections, evidence quality, citation support, and research-writing feedback.
Scientific method for validating claims with pre-registration, power analysis, statistical rigor, and Bayesian methods.
Meta-skill for publication-ready figures. Use when creating journal submission figures requiring multi-panel layouts, significance annotations, error bars, colorblind-saf — from…
Meta-skill for publication-ready figures. Use when creating journal submission figures requiring multi-panel layouts, significance annotations, error bars, colorblind-saf — from…
This is the core skill for the deep research and writing tool—combining AI-driven deep research with well-formatted written outputs.
Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points).
This is the core skill for the deep research and writing tool—combining AI-driven deep research with well-formatted written outputs.
Best practices for SciPy scientific computing, optimization, signal processing, and statistical analysis in Python
Digital signal-processing utilities tuned for neuroscience workflows. `hilbert(x)` returns analytic signal; `psd(x, fs, ...)` and `band_powers(x, fs, bands)` compute spectral…
Miscellaneous SciTeX utilities — terminal single-keypress helpers for interactive scripts. Public API (2 symbols) — `wait_key()` (block until any key is pressed; returns the…
Generic SLURM dispatch + persistent reservations for the SciTeX ecosystem. One-shot `srun`/`sbatch`/`sync`/`poll`/`fetch_result` plus a `Reservation` primitive that lets you book…
Reproducibility helpers for scientific Python experiments — unified seeded random-state for `random`/`numpy`/`torch`/`tf`, experiment ID + timestamp generation, and deterministic…
Scientific-paper search, metadata enrichment, PDF download, and BibTeX library management for the SciTeX ecosystem.
`@session` decorator for reproducible experiment lifecycle. Wrap `def main(...)`; the decorator parses CLI args, loads `config/*.yaml`, configures matplotlib + logging, runs the…
Publication-ready statistical testing — 23 tests, effect sizes, power analysis, auto test selection, and MCP tools for AI agents.
Project scaffolding cloner + code snippet library for the SciTeX ecosystem. 6 templates (pip-project, minimal, cloud-module, research, singularity, paper) vendored in a single…
Use when after computing a scoring function over all possible genomic-metabolomic candidate pairs (e.g., all 2966 MIBiG-GNPS BGC-spectrum pairs), when you have a subset of known…
Use when the council needs to surface organizational knowledge buried across multiple internal sources (wikis, design docs, ADRs, past tickets, postmortems, chat archives, code…
Find and document external code patterns from public sources. Use when user mentions 'find examples', 'scout patterns', 'research implementations', or starting new feature without…