Claude Code Skills·Claude Skills·The open SKILL.md registry for Claude
ClaudSkills / Science & Research / math-stats

Bio Alignment Files Bam Statistics

Category: Science & Research  ·  Sub-category: math-stats  ·  Last updated:
Generate alignment statistics using samtools flagstat, stats, depth, and coverage. Use when assessing alignment quality, calculating coverage, or generating QC reports.

About this skill (catalog notes)

Bio Alignment Files Bam Statistics includes 27 code blocks for direct copy-paste. The SKILL.md runs to about 1,074 words, in the catalog's typical mid-range.

Source
bg-szy.github.io/TOP-SKILLS
Original author
bg-szy
Indexed lastmod
Catalog position
Science & Research · math-stats
Indexed related skills
10

How Bio Alignment Files Bam Statistics fits the catalog

Bio Alignment Files Bam Statistics sits in the Science & Research category under the math-stats sub-topic in the ClaudSkills catalog. There are 10 related skills indexed alongside it; comparing a few before installing usually reveals which fits your workflow best.

These notes are auto-generated from features detected in the SKILL.md file and from this catalog's structure — they aren't part of the source repository.

From the source SKILL.md

<!-- # COPYRIGHT NOTICE # This file is part of the "Universal Biomedical Skills" project. # Copyright (c) 2026 MD BABU MIA, PhD <[email protected]> # All Rights Reserved. # # This code is proprietary and confidential. # Unauthorized copying of this file, via any medium is strictly prohibited. # # Provenance: Authenticated by MD BABU MIA

What this skill does

Bio Alignment Files Bam Statistics is a community-contributed Claude Code skill in the math-stats sub-category. It ships as a SKILL.md file that Claude Code auto-discovers under ~/.claude/skills/bio-alignment-files-bam-statistics/ and loads when your prompt matches the skill's trigger.

When to invoke it: Use when assessing alignment quality, calculating coverage, or generating QC reports.

Who uses this skill

The Bio Alignment Files Bam Statistics Claude Code skill is built for researchers, data scientists, academics, and analysts working with complex data and scientific literature. It's part of ClaudSkills (also referred to as Claude Skills or Claude Code Skills) — the open community-curated registry of 93,000+ SKILL.md files for Anthropic's Claude Code agent and the wider Claude ecosystem (Claude API, Claude Agent SDK).

How to install

Free

Manual install (2 steps)

mkdir -p ~/.claude/skills/bio-alignment-files-bam-statistics
curl -L https://claudskills.com/skills/bio-alignment-files-bam-statistics/SKILL.md \
  -o ~/.claude/skills/bio-alignment-files-bam-statistics/SKILL.md

Or just download SKILL.md directly and drop it into ~/.claude/skills/bio-alignment-files-bam-statistics/. Claude Code auto-discovers it on next session.

Skills live at ~/.claude/skills/bio-alignment-files-bam-statistics/SKILL.md on macOS/Linux, or %USERPROFILE%\.claude\skills\bio-alignment-files-bam-statistics\SKILL.md on Windows. See the full install guide for step-by-step instructions.

Telegram

📱 Install from your phone or desktop Telegram

Open @claudskills_bot on Telegram, tap Open Desktop App, and the desktop app installs this skill for you. Or share the bot link with a colleague — they get the same one-tap install. Learn more →

Pro

One-click install via the desktop app

The ClaudSkills desktop app installs any skill directly into ~/.claude/skills/ with one click — no terminal required. Pro starts at $9/mo or $149 lifetime.

Pro

For the full experience including quality scoring and one-click install features for each skill — upgrade to Pro.

Frequently asked questions

How do I install the Bio Alignment Files Bam Statistics Claude Code skill?
Install via the ClaudSkills desktop app (one click) or copy SKILL.md from the source repository to ~/.claude/skills/bio-alignment-files-bam-statistics/SKILL.md and restart Claude Code. Both flows are detailed at claudskills.com/install/.
What does the Bio Alignment Files Bam Statistics skill do?
Generate alignment statistics using samtools flagstat, stats, depth, and coverage. Use when assessing alignment quality, calculating coverage, or generating QC reports.
Is this skill free to install?
Yes. ClaudSkills is an open registry — every skill keeps its source repository's license, and manual install via copy is free. ClaudSkills Pro ($9/mo, $79/yr, or $149 one-time) adds one-click install via the desktop app and a multi-signal Quality Score.
When should I use the Bio Alignment Files Bam Statistics skill?
Use Bio Alignment Files Bam Statistics when your Claude Code task falls under the Science & Research category — specifically in the math stats area. Claude Code auto-discovers installed skills and invokes the right one based on the task description, so you can also ask Claude directly (e.g. "use Bio Alignment Files Bam Statistics" or describe the task and let Claude pick). Browse related skills at /category/science/.
What is a Claude Code skill and how does the Bio Alignment Files Bam Statistics skill fit in?
A Claude Code skill is a SKILL.md file that lives under ~/.claude/skills/<name>/ and tells the Claude Code CLI agent how to perform a specific task (instructions, prompts, allowed tools). Skills are auto-discovered at session start. Bio Alignment Files Bam Statistics is one of 67,000+ skills indexed in the open ClaudSkills catalog, classified under the Science & Research category. Learn more at /learn/what-is-a-claude-skill/.

Attribution & license

Cite this skill

If you reference this skill in a blog post, paper, or documentation, you can cite it as:

APA
bg-szy. (2026). Bio Alignment Files Bam Statistics [Claude Code skill]. ClaudSkills. https://claudskills.com/skills/bio-alignment-files-bam-statistics/
BibTeX
@misc{bio-alignment-files-bam-statistics-2026,
  author    = {bg-szy},
  title     = {Bio Alignment Files Bam Statistics [Claude Code skill]},
  year      = {2026},
  publisher = {ClaudSkills},
  url       = {https://claudskills.com/skills/bio-alignment-files-bam-statistics/}
}

Embed this skill

Promote, attribute, or link this skill from your own README, blog post, or documentation. All three snippets are free to use — no sign-up, no API key. More distribution surfaces →

Badge
[![ClaudSkills](https://claudskills.com/badge/bio-alignment-files-bam-statistics.svg)](https://claudskills.com/skills/bio-alignment-files-bam-statistics/?utm_source=badge&utm_medium=readme&utm_campaign=skill_badge)
<script>
<script src="https://claudskills.com/embed/bio-alignment-files-bam-statistics.js" async></script>
<iframe>
<iframe src="https://claudskills.com/embed/bio-alignment-files-bam-statistics.html" width="100%" height="160" frameborder="0" loading="lazy" title="ClaudSkills: Bio Alignment Files Bam Statistics"></iframe>

Free. No spam. Unsubscribe in one click.

More Science & Research skills

Browse all Science & Research skills in the ClaudSkills registry, or explore these other picks from the same category:

Browse all Science & Research skills → Top 100 skills
Part of ClaudSkills — the open registry for Claude Skills & Claude Code Skills.  ·  What's New  ·  Install guide  ·  About  ·  llms.txt

Part of Acreator Store — Adam Lankamer's AI tools: PerfectStudio · Ucaption · UTagger · AutoXPoster · TestYourSkills · AutomationFlows · Au Naturel · Telegram @acreatorstore