ClaudSkills / Science & Research / biology-medicine

Bio Crispr Screens Bagel Essentiality

Q: What is a Claude Code skill and how does the Bio Crispr Screens Bagel Essentiality skill fit in?

A Claude Code skill is a SKILL.md file that lives under ~/.claude/skills/<name>/ and tells the Claude Code CLI agent how to perform a specific task (instructions, prompts, allowed tools). Skills are auto-discovered at session start. Bio Crispr Screens Bagel Essentiality is one of 67,000+ skills indexed in the open ClaudSkills catalog, classified under the Science & Research category. Learn more at https://claudskills.com/learn/what-is-skill-md/.

Category: Science & Research · Sub-category: biology-medicine · Last updated: 2026-06-02

tool:linear

Identifies essential genes from CRISPR-Cas9 fitness screens using BAGEL2 (Kim & Hart 2021 Genome Med), a Bayesian classifier scoring per-gene Bayes Factors via log-likelihood ratios over per-sgRNA fold changes, calibrated against CEGv2 core-essentials (Hart 2017 G3, ~684 genes) and NEGv1 non-essentials (Hart 2014, ~927 genes). Covers the fc + bf + pr workflow, the linear-extrapolation improvement over BAGEL1 truncation, multi-target off-target correction, tumor-suppressor sensitivity (BAGEL2 detects enrichment), and BF-to-FDR calibration (BF >6 ≈ FDR 0.05 from Hart 2017). Use when classifying essential vs non-essential genes, calibrating BAGEL2 thresholds against PR curves, identifying tumor suppressors alongside essentials, comparing BAGEL2 hits to MAGeCK / drugZ, or generating publication-quality essentiality calls.

About this skill (catalog notes)

Bio Crispr Screens Bagel Essentiality includes 5 code blocks for direct copy-paste. At roughly 1,993 words the SKILL.md is on the longer end of the catalog distribution.

Source: bg-szy.github.io/TOP-SKILLS
Original author: bg-szy
Indexed lastmod: 2026-06-02
Catalog position: Science & Research · biology-medicine
Indexed related skills: 10

How Bio Crispr Screens Bagel Essentiality fits the catalog

Bio Crispr Screens Bagel Essentiality sits in the Science & Research category under the biology-medicine sub-topic in the ClaudSkills catalog. There are 10 related skills indexed alongside it; comparing a few before installing usually reveals which fits your workflow best.

These notes are auto-generated from features detected in the SKILL.md file and from this catalog's structure — they aren't part of the source repository.

What this skill does

Bio Crispr Screens Bagel Essentiality is a community-contributed Claude Code skill in the biology-medicine sub-category. It ships as a SKILL.md file that Claude Code auto-discovers under ~/.claude/skills/bio-crispr-screens-bagel-essentiality/ and loads when your prompt matches the skill's trigger.

When to invoke it: Use when classifying essential vs non-essential genes, calibrating BAGEL2 thresholds against PR curves, identifying tumor suppressors alongside essentials, comparing BAGEL2 hits to MAGeCK / drugZ, or generating publication-quality essentiality calls.

Who uses this skill

The Bio Crispr Screens Bagel Essentiality Claude Code skill is built for researchers, data scientists, academics, and analysts working with complex data and scientific literature. It's part of ClaudSkills (also referred to as Claude Skills or Claude Code Skills) — the open community-curated registry of 93,000+ SKILL.md files for Anthropic's Claude Code agent and the wider Claude ecosystem (Claude API, Claude Agent SDK).

How to install

Free

Manual install (2 steps)

mkdir -p ~/.claude/skills/bio-crispr-screens-bagel-essentiality
curl -L https://claudskills.com/skills/bio-crispr-screens-bagel-essentiality/SKILL.md \
  -o ~/.claude/skills/bio-crispr-screens-bagel-essentiality/SKILL.md

Or just download SKILL.md directly and drop it into ~/.claude/skills/bio-crispr-screens-bagel-essentiality/. Claude Code auto-discovers it on next session.

Skills live at ~/.claude/skills/bio-crispr-screens-bagel-essentiality/SKILL.md on macOS/Linux, or %USERPROFILE%\.claude\skills\bio-crispr-screens-bagel-essentiality\SKILL.md on Windows. See the full install guide for step-by-step instructions.

📱 Install from your phone or desktop Telegram

Open @claudskills_bot on Telegram, tap Open Desktop App, and the desktop app installs this skill for you. Or share the bot link with a colleague — they get the same one-tap install. Learn more →

Pro

One-click install via the desktop app

The ClaudSkills desktop app installs any skill directly into ~/.claude/skills/ with one click — no terminal required. Pro starts at $9/mo or $149 lifetime.

Pro

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See pricing → Download desktop app

Frequently asked questions

How do I install the Bio Crispr Screens Bagel Essentiality Claude Code skill?

Install via the ClaudSkills desktop app (one click) or copy SKILL.md from the source repository to ~/.claude/skills/bio-crispr-screens-bagel-essentiality/SKILL.md and restart Claude Code. Both flows are detailed at claudskills.com/install/.

What does the Bio Crispr Screens Bagel Essentiality skill do?

Is this skill free to install?

Yes. ClaudSkills is an open registry — every skill keeps its source repository's license, and manual install via copy is free. ClaudSkills Pro ($9/mo, $79/yr, or $149 one-time) adds one-click install via the desktop app and a multi-signal Quality Score.

When should I use the Bio Crispr Screens Bagel Essentiality skill?

Use Bio Crispr Screens Bagel Essentiality when your Claude Code task falls under the Science & Research category — specifically in the biology medicine area. Claude Code auto-discovers installed skills and invokes the right one based on the task description, so you can also ask Claude directly (e.g. "use Bio Crispr Screens Bagel Essentiality" or describe the task and let Claude pick). Browse related skills at /category/science/.

What is a Claude Code skill and how does the Bio Crispr Screens Bagel Essentiality skill fit in?

A Claude Code skill is a SKILL.md file that lives under ~/.claude/skills/<name>/ and tells the Claude Code CLI agent how to perform a specific task (instructions, prompts, allowed tools). Skills are auto-discovered at session start. Bio Crispr Screens Bagel Essentiality is one of 67,000+ skills indexed in the open ClaudSkills catalog, classified under the Science & Research category. Learn more at /learn/what-is-a-claude-skill/.

Attribution & license

Source: https://github.com/bg-szy/TOP-SKILLS/blob/HEAD/skills/awesome-skills/bio-crispr-screens-bagel-essentiality/SKILL.md
Author: bg-szy
Website: https://bg-szy.github.io/TOP-SKILLS/

Cite this skill

If you reference this skill in a blog post, paper, or documentation, you can cite it as:

APA

bg-szy. (2026). Bio Crispr Screens Bagel Essentiality [Claude Code skill]. ClaudSkills. https://claudskills.com/skills/bio-crispr-screens-bagel-essentiality/

BibTeX

@misc{bio-crispr-screens-bagel-essentiality-2026,
  author    = {bg-szy},
  title     = {Bio Crispr Screens Bagel Essentiality [Claude Code skill]},
  year      = {2026},
  publisher = {ClaudSkills},
  url       = {https://claudskills.com/skills/bio-crispr-screens-bagel-essentiality/}
}

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