ClaudSkills / Science & Research / biology-medicine

bio-genome-assembly-hifi-assembly

Q: What is a Claude Code skill and how does the bio-genome-assembly-hifi-assembly skill fit in?

A Claude Code skill is a SKILL.md file that lives under ~/.claude/skills/<name>/ and tells the Claude Code CLI agent how to perform a specific task (instructions, prompts, allowed tools). Skills are auto-discovered at session start. bio-genome-assembly-hifi-assembly is one of 67,000+ skills indexed in the open ClaudSkills catalog, classified under the Science & Research category. Learn more at https://claudskills.com/learn/what-is-skill-md/.

Category: Science & Research · Sub-category: biology-medicine · Last updated: 2026-06-02

Assembles haplotype-resolved diploid and telomere-to-telomere (T2T) genomes from PacBio HiFi reads with hifiasm (HiFi-only, Hi-C, or trio phasing) and verkko (HiFi + ultralong ONT for T2T), extracting contigs from GFA and routing phasing QC to k-mer/trio metrics. Covers why a primary assembly is a haplotype mosaic that exists in no cell, partial-vs-full phasing (the .bp. vs .dip. filename convention), the purge-default trap on inbred samples, the --hom-cov coverage-estimate alarm, and verkko-vs-hifiasm for T2T. Use when assembling a diploid eukaryote from HiFi, phasing haplotypes with parents (trio) or Hi-C, deciding whether to chase T2T, or diagnosing switch errors invisible to N50/BUSCO/QV.

What this skill does

bio-genome-assembly-hifi-assembly is a community-contributed Claude Code skill in the biology-medicine sub-category. It ships as a SKILL.md file that Claude Code auto-discovers under ~/.claude/skills/bio-genome-assembly-hifi-assembly--skills-hifi-assembly/ and loads when your prompt matches the skill's trigger.

When to invoke it: Use when assembling a diploid eukaryote from HiFi, phasing haplotypes with parents (trio) or Hi-C, deciding whether to chase T2T, or diagnosing switch errors invisible to N50/BUSCO/QV.

Who uses this skill

The bio-genome-assembly-hifi-assembly Claude Code skill is built for researchers, data scientists, academics, and analysts working with complex data and scientific literature. It's part of ClaudSkills (also referred to as Claude Skills or Claude Code Skills) — the open community-curated registry of 93,000+ SKILL.md files for Anthropic's Claude Code agent and the wider Claude ecosystem (Claude API, Claude Agent SDK).

How to install

Free

Manual install (2 steps)

mkdir -p ~/.claude/skills/bio-genome-assembly-hifi-assembly--skills-hifi-assembly
curl -L https://claudskills.com/skills/bio-genome-assembly-hifi-assembly--skills-hifi-assembly/SKILL.md \
  -o ~/.claude/skills/bio-genome-assembly-hifi-assembly--skills-hifi-assembly/SKILL.md

Or just download SKILL.md directly and drop it into ~/.claude/skills/bio-genome-assembly-hifi-assembly--skills-hifi-assembly/. Claude Code auto-discovers it on next session.

Skills live at ~/.claude/skills/bio-genome-assembly-hifi-assembly--skills-hifi-assembly/SKILL.md on macOS/Linux, or %USERPROFILE%\.claude\skills\bio-genome-assembly-hifi-assembly--skills-hifi-assembly\SKILL.md on Windows. See the full install guide for step-by-step instructions.

📱 Install from your phone or desktop Telegram

Open @claudskills_bot on Telegram, tap Open Desktop App, and the desktop app installs this skill for you. Or share the bot link with a colleague — they get the same one-tap install. Learn more →

Pro

One-click install via the desktop app

The ClaudSkills desktop app installs any skill directly into ~/.claude/skills/ with one click — no terminal required. Pro starts at $9/mo or $149 lifetime.

Pro

For the full experience including quality scoring and one-click install features for each skill — upgrade to Pro.

See pricing → Download desktop app

Frequently asked questions

How do I install the bio-genome-assembly-hifi-assembly Claude Code skill?

Install via the ClaudSkills desktop app (one click) or copy SKILL.md from the source repository to ~/.claude/skills/bio-genome-assembly-hifi-assembly--skills-hifi-assembly/SKILL.md and restart Claude Code. Both flows are detailed at claudskills.com/install/.

What does the bio-genome-assembly-hifi-assembly skill do?

Is this skill free to install?

Yes. ClaudSkills is an open registry — every skill keeps its source repository's license, and manual install via copy is free. ClaudSkills Pro ($9/mo, $79/yr, or $149 one-time) adds one-click install via the desktop app and a multi-signal Quality Score.

When should I use the bio-genome-assembly-hifi-assembly skill?

Use bio-genome-assembly-hifi-assembly when your Claude Code task falls under the Science & Research category — specifically in the biology medicine area. Claude Code auto-discovers installed skills and invokes the right one based on the task description, so you can also ask Claude directly (e.g. "use bio-genome-assembly-hifi-assembly" or describe the task and let Claude pick). Browse related skills at /category/science/.

What is a Claude Code skill and how does the bio-genome-assembly-hifi-assembly skill fit in?

A Claude Code skill is a SKILL.md file that lives under ~/.claude/skills/<name>/ and tells the Claude Code CLI agent how to perform a specific task (instructions, prompts, allowed tools). Skills are auto-discovered at session start. bio-genome-assembly-hifi-assembly is one of 67,000+ skills indexed in the open ClaudSkills catalog, classified under the Science & Research category. Learn more at /learn/what-is-a-claude-skill/.

Attribution & license

Source: https://github.com/bg-szy/TOP-SKILLS/blob/HEAD/skills/awesome-skills/bio-genome-assembly-hifi-assembly__skills-hifi-assembly/SKILL.md
Author: bg-szy
Website: https://bg-szy.github.io/TOP-SKILLS/

Cite this skill

If you reference this skill in a blog post, paper, or documentation, you can cite it as:

APA

bg-szy. (2026). bio-genome-assembly-hifi-assembly [Claude Code skill]. ClaudSkills. https://claudskills.com/skills/bio-genome-assembly-hifi-assembly--skills-hifi-assembly/

BibTeX

@misc{bio-genome-assembly-hifi-assembly--skills-hifi-assembly-2026,
  author    = {bg-szy},
  title     = {bio-genome-assembly-hifi-assembly [Claude Code skill]},
  year      = {2026},
  publisher = {ClaudSkills},
  url       = {https://claudskills.com/skills/bio-genome-assembly-hifi-assembly--skills-hifi-assembly/}
}

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