ClaudSkills / Science & Research / biology-medicine

Bio Nextflow Manager

Quality score: 70/100 · Category: Science & Research · Sub-category: biology-medicine

Run nf-core bioinformatics pipelines (rnaseq, sarek, atacseq) on sequencing data. Use when analyzing RNA-seq, WGS/WES, or ATAC-seq data—either local FASTQs or public datasets from GEO/SRA. Triggers on nf-core, Nextflow, FASTQ analysis, variant calling, gene expression, differential expression, GEO reanalysis, GSE/GSM/SRR accessions, or samplesheet creation.

What this skill does

Bio Nextflow Manager is a production-ready Claude Code skill (quality score 70/100) in the biology-medicine sub-category. It ships as a SKILL.md file that Claude Code auto-discovers under ~/.claude/skills/bio-nextflow-manager/ and loads when your prompt matches the skill's trigger.

When to invoke it: Use when analyzing RNA-seq, WGS/WES, or ATAC-seq data—either local FASTQs or public datasets from GEO/SRA. Triggers on nf-core, Nextflow, FASTQ analysis, variant calling, gene expression, differential expression, GEO reanalysis, GSE/GSM/SRR accessions, or samplesheet creation.

Who uses this skill

The Bio Nextflow Manager skill is built for researchers, data scientists, academics, and analysts working with complex data and scientific literature. It is part of the open ClaudSkills registry, a community-curated catalog of 15,000+ capabilities you can install for Claude Code — the Claude CLI agent.

How to install

Free

Manual install (2 steps)

mkdir -p ~/.claude/skills/bio-nextflow-manager
curl -L https://claudskills.com/skills/bio-nextflow-manager/SKILL.md \
  -o ~/.claude/skills/bio-nextflow-manager/SKILL.md

Or just download SKILL.md directly and drop it into ~/.claude/skills/bio-nextflow-manager/. Claude Code auto-discovers it on next session.

Skills live at ~/.claude/skills/bio-nextflow-manager/SKILL.md on macOS/Linux, or %USERPROFILE%\.claude\skills\bio-nextflow-manager\SKILL.md on Windows. See the full install guide for step-by-step instructions.

Pro

One-click install via the desktop app

The ClaudSkills desktop app installs any skill directly into ~/.claude/skills/ with one click — no terminal required. Pro starts at $9/mo or $149 lifetime.

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Part of ClaudSkills — the open registry for Claude Code skills. · What's New · Install guide · About · llms.txt

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