Bio Workflows Microbiome Pipeline

Q: What is a Claude Code skill and how does the Bio Workflows Microbiome Pipeline skill fit in?

A Claude Code skill is a SKILL.md file that lives under ~/.claude/skills/<name>/ and tells the Claude Code CLI agent how to perform a specific task (instructions, prompts, allowed tools). Skills are auto-discovered at session start. Bio Workflows Microbiome Pipeline is one of 67,000+ skills indexed in the open ClaudSkills catalog, classified under the Engineering category. Learn more at https://claudskills.com/learn/what-is-skill-md/.

Category: Engineering · Sub-category: testing · Last updated: 2026-06-02

End-to-end 16S amplicon workflow from FASTQ reads to differential abundance. Orchestrates DADA2 ASV inference, taxonomy assignment, diversity analysis, and compositional — from bg-szy/TOP-SKILLS

About this skill (catalog notes)

Bio Workflows Microbiome Pipeline includes a dedicated installation section; 6 code blocks for direct copy-paste. The SKILL.md runs to about 868 words, in the catalog's typical mid-range.

Source: bg-szy.github.io/TOP-SKILLS
Original author: bg-szy
Indexed lastmod: 2026-06-02
Catalog position: Engineering · testing
Indexed related skills: 10

How Bio Workflows Microbiome Pipeline fits the catalog

Bio Workflows Microbiome Pipeline sits in the Engineering category under the testing sub-topic in the ClaudSkills catalog. There are 10 related skills indexed alongside it; comparing a few before installing usually reveals which fits your workflow best.

These notes are auto-generated from features detected in the SKILL.md file and from this catalog's structure — they aren't part of the source repository.

From the source SKILL.md

<!-- # COPYRIGHT NOTICE # This file is part of the "Universal Biomedical Skills" project. # Copyright (c) 2026 MD BABU MIA, PhD <[email protected]> # All Rights Reserved. # # This code is proprietary and confidential. # Unauthorized copying of this file, via any medium is strictly prohibited. # # Provenance: Authenticated by MD BABU MIA

What this skill does

Bio Workflows Microbiome Pipeline is a community-contributed Claude Code skill in the testing sub-category. It ships as a SKILL.md file that Claude Code auto-discovers under ~/.claude/skills/bio-workflows-microbiome-pipeline/ and loads when your prompt matches the skill's trigger.

Who uses this skill

The Bio Workflows Microbiome Pipeline Claude Code skill is built for software engineers, backend developers, full-stack teams, and technical leads building and maintaining production systems. It's part of ClaudSkills (also referred to as Claude Skills or Claude Code Skills) — the open community-curated registry of 93,000+ SKILL.md files for Anthropic's Claude Code agent and the wider Claude ecosystem (Claude API, Claude Agent SDK).

How to install

Free

Manual install (2 steps)

mkdir -p ~/.claude/skills/bio-workflows-microbiome-pipeline
curl -L https://claudskills.com/skills/bio-workflows-microbiome-pipeline/SKILL.md \
  -o ~/.claude/skills/bio-workflows-microbiome-pipeline/SKILL.md

Or just download SKILL.md directly and drop it into ~/.claude/skills/bio-workflows-microbiome-pipeline/. Claude Code auto-discovers it on next session.

Skills live at ~/.claude/skills/bio-workflows-microbiome-pipeline/SKILL.md on macOS/Linux, or %USERPROFILE%\.claude\skills\bio-workflows-microbiome-pipeline\SKILL.md on Windows. See the full install guide for step-by-step instructions.

📱 Install from your phone or desktop Telegram

Open @claudskills_bot on Telegram, tap Open Desktop App, and the desktop app installs this skill for you. Or share the bot link with a colleague — they get the same one-tap install. Learn more →

Pro

One-click install via the desktop app

The ClaudSkills desktop app installs any skill directly into ~/.claude/skills/ with one click — no terminal required. Pro starts at $9/mo or $149 lifetime.

Pro

For the full experience including quality scoring and one-click install features for each skill — upgrade to Pro.

See pricing → Download desktop app

Frequently asked questions

How do I install the Bio Workflows Microbiome Pipeline Claude Code skill?

Install via the ClaudSkills desktop app (one click) or copy SKILL.md from the source repository to ~/.claude/skills/bio-workflows-microbiome-pipeline/SKILL.md and restart Claude Code. Both flows are detailed at claudskills.com/install/.

What does the Bio Workflows Microbiome Pipeline skill do?

End-to-end 16S amplicon workflow from FASTQ reads to differential abundance. Orchestrates DADA2 ASV inference, taxonomy assignment, diversity analysis, and compositional — from bg-szy/TOP-SKILLS

Is this skill free to install?

Yes. ClaudSkills is an open registry — every skill keeps its source repository's license, and manual install via copy is free. ClaudSkills Pro ($9/mo, $79/yr, or $149 one-time) adds one-click install via the desktop app and a multi-signal Quality Score.

When should I use the Bio Workflows Microbiome Pipeline skill?

Use Bio Workflows Microbiome Pipeline when your Claude Code task falls under the Engineering category — specifically in the testing area. Claude Code auto-discovers installed skills and invokes the right one based on the task description, so you can also ask Claude directly (e.g. "use Bio Workflows Microbiome Pipeline" or describe the task and let Claude pick). Browse related skills at /category/engineering/.

What is a Claude Code skill and how does the Bio Workflows Microbiome Pipeline skill fit in?

A Claude Code skill is a SKILL.md file that lives under ~/.claude/skills/<name>/ and tells the Claude Code CLI agent how to perform a specific task (instructions, prompts, allowed tools). Skills are auto-discovered at session start. Bio Workflows Microbiome Pipeline is one of 67,000+ skills indexed in the open ClaudSkills catalog, classified under the Engineering category. Learn more at /learn/what-is-a-claude-skill/.

Attribution & license

Source: https://github.com/bg-szy/TOP-SKILLS/blob/HEAD/skills/awesome-skills/bio-workflows-microbiome-pipeline/SKILL.md
Author: bg-szy
Website: https://bg-szy.github.io/TOP-SKILLS/

Cite this skill

If you reference this skill in a blog post, paper, or documentation, you can cite it as:

APA

bg-szy. (2026). Bio Workflows Microbiome Pipeline [Claude Code skill]. ClaudSkills. https://claudskills.com/skills/bio-workflows-microbiome-pipeline/

BibTeX

@misc{bio-workflows-microbiome-pipeline-2026,
  author    = {bg-szy},
  title     = {Bio Workflows Microbiome Pipeline [Claude Code skill]},
  year      = {2026},
  publisher = {ClaudSkills},
  url       = {https://claudskills.com/skills/bio-workflows-microbiome-pipeline/}
}

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Browse all Engineering skills → Top 100 skills

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