ClaudSkills / Science & Research / biology-medicine

Eggnog Run

Q: What is a Claude Code skill and how does the Eggnog Run skill fit in?

A Claude Code skill is a SKILL.md file that lives under ~/.claude/skills/<name>/ and tells the Claude Code CLI agent how to perform a specific task (instructions, prompts, allowed tools). Skills are auto-discovered at session start. Eggnog Run is one of 67,000+ skills indexed in the open ClaudSkills catalog, classified under the Science & Research category. Learn more at https://claudskills.com/learn/what-is-skill-md/.

Category: Science & Research · Sub-category: biology-medicine · Last updated: 2026-06-13

Run eggNOG-mapper on genome protein FASTA files to generate functional annotations (COG, GO, KEGG, EC, PFAMs). Reads genomes from cyanobacteria_genomes.csv, skips already-annotated strains unless --force is given. Results are written to cache/<organism>/genomes/<strain>/eggnog/.

About this skill (catalog notes)

Eggnog Run includes at least one code block.

License: MIT
Original author: wosnat
Indexed lastmod: 2026-06-13
Catalog position: Science & Research · biology-medicine
Indexed related skills: 10

How Eggnog Run fits the catalog

Eggnog Run sits in the Science & Research category under the biology-medicine sub-topic in the ClaudSkills catalog. There are 10 related skills indexed alongside it; comparing a few before installing usually reveals which fits your workflow best.

These notes are auto-generated from features detected in the SKILL.md file and from this catalog's structure — they aren't part of the source repository.

From the source SKILL.md

Run eggNOG-mapper on all (or selected) genome protein FASTA files.

What this skill does

Eggnog Run is a community-contributed Claude Code skill in the biology-medicine sub-category. It ships as a SKILL.md file that Claude Code auto-discovers under ~/.claude/skills/eggnog-run/ and loads when your prompt matches the skill's trigger.

Who uses this skill

The Eggnog Run Claude Code skill is built for researchers, data scientists, academics, and analysts working with complex data and scientific literature. It's part of ClaudSkills (also referred to as Claude Skills or Claude Code Skills) — the open community-curated registry of 116,000+ SKILL.md files for Anthropic's Claude Code agent and the wider Claude ecosystem (Claude API, Claude Agent SDK).

How to install

Free

Manual install (2 steps)

mkdir -p ~/.claude/skills/eggnog-run
curl -L https://claudskills.com/skills/eggnog-run/SKILL.md \
  -o ~/.claude/skills/eggnog-run/SKILL.md

Or just download SKILL.md directly and drop it into ~/.claude/skills/eggnog-run/. Claude Code auto-discovers it on next session.

Skills live at ~/.claude/skills/eggnog-run/SKILL.md on macOS/Linux, or %USERPROFILE%\.claude\skills\eggnog-run\SKILL.md on Windows. See the full install guide for step-by-step instructions.

📱 Install from your phone or desktop Telegram

Open @claudskills_bot on Telegram, tap Open Desktop App, and the desktop app installs this skill for you. Or share the bot link with a colleague — they get the same one-tap install. Learn more →

Pro

One-click install via the desktop app

The ClaudSkills desktop app installs any skill directly into ~/.claude/skills/ with one click — no terminal required. Pro starts at $9/mo or $149 lifetime.

Pro

For the full experience including quality scoring and one-click install features for each skill — upgrade to Pro.

See pricing → Download desktop app

Frequently asked questions

How do I install the Eggnog Run Claude Code skill?

Install via the ClaudSkills desktop app (one click) or copy SKILL.md from the source repository to ~/.claude/skills/eggnog-run/SKILL.md and restart Claude Code. Both flows are detailed at claudskills.com/install/.

What does the Eggnog Run skill do?

Is this skill free to install?

Yes. ClaudSkills is an open registry — every skill keeps its source repository's license, and manual install via copy is free. ClaudSkills Pro ($9/mo, $79/yr, or $149 one-time) adds one-click install via the desktop app and a multi-signal Quality Score.

When should I use the Eggnog Run skill?

Use Eggnog Run when your Claude Code task falls under the Science & Research category — specifically in the biology medicine area. Claude Code auto-discovers installed skills and invokes the right one based on the task description, so you can also ask Claude directly (e.g. "use Eggnog Run" or describe the task and let Claude pick). Browse related skills at /category/science/.

What is a Claude Code skill and how does the Eggnog Run skill fit in?

A Claude Code skill is a SKILL.md file that lives under ~/.claude/skills/<name>/ and tells the Claude Code CLI agent how to perform a specific task (instructions, prompts, allowed tools). Skills are auto-discovered at session start. Eggnog Run is one of 67,000+ skills indexed in the open ClaudSkills catalog, classified under the Science & Research category. Learn more at /learn/what-is-a-claude-skill/.

Attribution & license

Source: https://github.com/wosnat/multiomics_biocypher_kg/blob/a0df2f60eb3c14d10a3950430ee1310aa8be3989/.claude/skills/eggnog-run/SKILL.md
License: MIT
Author: wosnat

Cite this skill

If you reference this skill in a blog post, paper, or documentation, you can cite it as:

APA

wosnat. (2026). Eggnog Run [Claude Code skill]. ClaudSkills. https://claudskills.com/skills/eggnog-run/

BibTeX

@misc{eggnog-run-2026,
  author    = {wosnat},
  title     = {Eggnog Run [Claude Code skill]},
  year      = {2026},
  publisher = {ClaudSkills},
  url       = {https://claudskills.com/skills/eggnog-run/}
}

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