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Mass Spectrometry Data Integration

Category: General  ·  Sub-category: integrations  ·  Last updated:
type:integration
Use when you have multiple mzML or HDF5 feature tables from the same study acquired on the same or similar instruments and need to align feature coordinates across samples to correct for systematic shifts in mass-to-charge, drift time, or retention time caused by instrumental drift, column aging.
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About this skill (catalog notes)

Mass Spectrometry Data Integration includes explicit scope boundaries (an explicit 'when not to use' or 'out of scope' section); worked examples; at least one code block. The SKILL.md runs to about 997 words, in the catalog's typical mid-range.

Source
holobiomicslab.cnrs.fr
License
Apache-2.0
Original author
HolobiomicsLab
Indexed lastmod
Catalog position
General · integrations
Indexed related skills
10

How Mass Spectrometry Data Integration fits the catalog

Mass Spectrometry Data Integration sits in the General category under the integrations sub-topic in the ClaudSkills catalog. There are 10 related skills indexed alongside it; comparing a few before installing usually reveals which fits your workflow best.

These notes are auto-generated from features detected in the SKILL.md file and from this catalog's structure — they aren't part of the source repository.

What this skill does

Mass Spectrometry Data Integration is a community-contributed Claude Code skill in the integrations sub-category. It ships as a SKILL.md file that Claude Code auto-discovers under ~/.claude/skills/mass-spectrometry-data-integration/ and loads when your prompt matches the skill's trigger.

When to invoke it: Use when you have multiple mzML or HDF5 feature tables from the same study acquired on the same or similar instruments and need to align feature coordinates across samples to correct for systematic shifts in mass-to-charge, drift time, or retention time caused by instrumental drift, column aging.

Who uses this skill

The Mass Spectrometry Data Integration Claude Code skill is built for Claude Code users and developers across all disciplines looking for general-purpose AI assistance. It's part of ClaudSkills (also referred to as Claude Skills or Claude Code Skills) — the open community-curated registry of 146,000+ SKILL.md files for Anthropic's Claude Code agent and the wider Claude ecosystem (Claude API, Claude Agent SDK).

How to install

Free

Manual install (2 steps)

mkdir -p ~/.claude/skills/mass-spectrometry-data-integration
curl -L https://claudskills.com/skills/mass-spectrometry-data-integration/SKILL.md \
  -o ~/.claude/skills/mass-spectrometry-data-integration/SKILL.md

Or just download SKILL.md directly and drop it into ~/.claude/skills/mass-spectrometry-data-integration/. Claude Code auto-discovers it on next session.

Skills live at ~/.claude/skills/mass-spectrometry-data-integration/SKILL.md on macOS/Linux, or %USERPROFILE%\.claude\skills\mass-spectrometry-data-integration\SKILL.md on Windows. See the full install guide for step-by-step instructions.

Telegram

📱 Install from your phone or desktop Telegram

Open @claudskills_bot on Telegram, tap Open Desktop App, and the desktop app installs this skill for you. Or share the bot link with a colleague — they get the same one-tap install. Learn more →

Pro

One-click install via the desktop app

The ClaudSkills desktop app installs any skill directly into ~/.claude/skills/ with one click — no terminal required. Pro starts at $9/mo or $149 lifetime.

Pro

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See pricing → Download desktop app

Frequently asked questions

How do I install the Mass Spectrometry Data Integration Claude Code skill?
Install via the ClaudSkills desktop app (one click) or copy SKILL.md from the source repository to ~/.claude/skills/mass-spectrometry-data-integration/SKILL.md and restart Claude Code. Both flows are detailed at claudskills.com/install/.
What does the Mass Spectrometry Data Integration skill do?
Use when you have multiple mzML or HDF5 feature tables from the same study acquired on the same or similar instruments and need to align feature coordinates across samples to correct for systematic shifts in mass-to-charge, drift time, or retention time caused by instrumental drift, column aging.
Is this skill free to install?
Yes. ClaudSkills is an open registry — every skill keeps its source repository's license, and manual install via copy is free. ClaudSkills Pro ($9/mo, $79/yr, or $149 one-time) adds one-click install via the desktop app and a multi-signal Quality Score.
When should I use the Mass Spectrometry Data Integration skill?
Use Mass Spectrometry Data Integration when your Claude Code task falls under the General category — specifically in the integrations area. Claude Code auto-discovers installed skills and invokes the right one based on the task description, so you can also ask Claude directly (e.g. "use Mass Spectrometry Data Integration" or describe the task and let Claude pick). Browse related skills at /category/general/.
What is a Claude Code skill and how does the Mass Spectrometry Data Integration skill fit in?
A Claude Code skill is a SKILL.md file that lives under ~/.claude/skills/<name>/ and tells the Claude Code CLI agent how to perform a specific task (instructions, prompts, allowed tools). Skills are auto-discovered at session start. Mass Spectrometry Data Integration is one of 67,000+ skills indexed in the open ClaudSkills catalog, classified under the General category. Learn more at /learn/what-is-a-claude-skill/.

Attribution & license

Cite this skill

If you reference this skill in a blog post, paper, or documentation, you can cite it as:

APA
HolobiomicsLab. (2026). Mass Spectrometry Data Integration [Claude Code skill]. ClaudSkills. https://claudskills.com/skills/mass-spectrometry-data-integration/
BibTeX
@misc{mass-spectrometry-data-integration-2026,
  author    = {HolobiomicsLab},
  title     = {Mass Spectrometry Data Integration [Claude Code skill]},
  year      = {2026},
  publisher = {ClaudSkills},
  url       = {https://claudskills.com/skills/mass-spectrometry-data-integration/}
}

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Security scan

Grade A · scanned 2026-07-06 — free static scan against the OWASP Agentic Skills Top 10.

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Browse all General skills in the ClaudSkills registry, or explore these other picks from the same category:

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