Claude Code Skills·Claude Skills·The open SKILL.md registry for Claude
ClaudSkills / Science & Research / science-misc

Metabolite Kegg Pathway Enrichment

Category: Science & Research  ·  Sub-category: science-misc  ·  Last updated:
Use when you have an annotated list of metabolite compounds (with associated m/z features or compound IDs) and want to determine which KEGG metabolic pathways are significantly enriched or depleted in your experimental samples.
Security AStatic scan found no risk patternsHow grading works ›

About this skill (catalog notes)

Metabolite Kegg Pathway Enrichment includes explicit scope boundaries (an explicit 'when not to use' or 'out of scope' section); worked examples; at least one code block. The SKILL.md runs to about 766 words, in the catalog's typical mid-range.

Source
holobiomicslab.cnrs.fr
License
Apache-2.0
Original author
HolobiomicsLab
Indexed lastmod
Catalog position
Science & Research · science-misc
Indexed related skills
10

How Metabolite Kegg Pathway Enrichment fits the catalog

Metabolite Kegg Pathway Enrichment sits in the Science & Research category under the science-misc sub-topic in the ClaudSkills catalog. There are 10 related skills indexed alongside it; comparing a few before installing usually reveals which fits your workflow best.

These notes are auto-generated from features detected in the SKILL.md file and from this catalog's structure — they aren't part of the source repository.

What this skill does

Metabolite Kegg Pathway Enrichment is a community-contributed Claude Code skill in the science-misc sub-category. It ships as a SKILL.md file that Claude Code auto-discovers under ~/.claude/skills/metabolite-kegg-pathway-enrichment/ and loads when your prompt matches the skill's trigger.

When to invoke it: Use when you have an annotated list of metabolite compounds (with associated m/z features or compound IDs) and want to determine which KEGG metabolic pathways are significantly enriched or depleted in your experimental samples.

Who uses this skill

The Metabolite Kegg Pathway Enrichment Claude Code skill is built for researchers, data scientists, academics, and analysts working with complex data and scientific literature. It's part of ClaudSkills (also referred to as Claude Skills or Claude Code Skills) — the open community-curated registry of 146,000+ SKILL.md files for Anthropic's Claude Code agent and the wider Claude ecosystem (Claude API, Claude Agent SDK).

How to install

Free

Manual install (2 steps)

mkdir -p ~/.claude/skills/metabolite-kegg-pathway-enrichment
curl -L https://claudskills.com/skills/metabolite-kegg-pathway-enrichment/SKILL.md \
  -o ~/.claude/skills/metabolite-kegg-pathway-enrichment/SKILL.md

Or just download SKILL.md directly and drop it into ~/.claude/skills/metabolite-kegg-pathway-enrichment/. Claude Code auto-discovers it on next session.

Skills live at ~/.claude/skills/metabolite-kegg-pathway-enrichment/SKILL.md on macOS/Linux, or %USERPROFILE%\.claude\skills\metabolite-kegg-pathway-enrichment\SKILL.md on Windows. See the full install guide for step-by-step instructions.

Telegram

📱 Install from your phone or desktop Telegram

Open @claudskills_bot on Telegram, tap Open Desktop App, and the desktop app installs this skill for you. Or share the bot link with a colleague — they get the same one-tap install. Learn more →

Pro

One-click install via the desktop app

The ClaudSkills desktop app installs any skill directly into ~/.claude/skills/ with one click — no terminal required. Pro starts at $9/mo or $149 lifetime.

Pro

For the full experience including quality scoring and one-click install features for each skill — upgrade to Pro.

See pricing → Download desktop app

Frequently asked questions

How do I install the Metabolite Kegg Pathway Enrichment Claude Code skill?
Install via the ClaudSkills desktop app (one click) or copy SKILL.md from the source repository to ~/.claude/skills/metabolite-kegg-pathway-enrichment/SKILL.md and restart Claude Code. Both flows are detailed at claudskills.com/install/.
What does the Metabolite Kegg Pathway Enrichment skill do?
Use when you have an annotated list of metabolite compounds (with associated m/z features or compound IDs) and want to determine which KEGG metabolic pathways are significantly enriched or depleted in your experimental samples.
Is this skill free to install?
Yes. ClaudSkills is an open registry — every skill keeps its source repository's license, and manual install via copy is free. ClaudSkills Pro ($9/mo, $79/yr, or $149 one-time) adds one-click install via the desktop app and a multi-signal Quality Score.
When should I use the Metabolite Kegg Pathway Enrichment skill?
Use Metabolite Kegg Pathway Enrichment when your Claude Code task falls under the Science & Research category — specifically in the science misc area. Claude Code auto-discovers installed skills and invokes the right one based on the task description, so you can also ask Claude directly (e.g. "use Metabolite Kegg Pathway Enrichment" or describe the task and let Claude pick). Browse related skills at /category/science/.
What is a Claude Code skill and how does the Metabolite Kegg Pathway Enrichment skill fit in?
A Claude Code skill is a SKILL.md file that lives under ~/.claude/skills/<name>/ and tells the Claude Code CLI agent how to perform a specific task (instructions, prompts, allowed tools). Skills are auto-discovered at session start. Metabolite Kegg Pathway Enrichment is one of 67,000+ skills indexed in the open ClaudSkills catalog, classified under the Science & Research category. Learn more at /learn/what-is-a-claude-skill/.

Attribution & license

Cite this skill

If you reference this skill in a blog post, paper, or documentation, you can cite it as:

APA
HolobiomicsLab. (2026). Metabolite Kegg Pathway Enrichment [Claude Code skill]. ClaudSkills. https://claudskills.com/skills/metabolite-kegg-pathway-enrichment/
BibTeX
@misc{metabolite-kegg-pathway-enrichment-2026,
  author    = {HolobiomicsLab},
  title     = {Metabolite Kegg Pathway Enrichment [Claude Code skill]},
  year      = {2026},
  publisher = {ClaudSkills},
  url       = {https://claudskills.com/skills/metabolite-kegg-pathway-enrichment/}
}

Embed this skill

Promote, attribute, or link this skill from your own README, blog post, or documentation. All three snippets are free to use — no sign-up, no API key. More distribution surfaces →

Badge
[![ClaudSkills](https://claudskills.com/badge/metabolite-kegg-pathway-enrichment.svg)](https://claudskills.com/skills/metabolite-kegg-pathway-enrichment/?utm_source=badge&utm_medium=readme&utm_campaign=skill_badge)
<script>
<script src="https://claudskills.com/embed/metabolite-kegg-pathway-enrichment.js" async></script>
<iframe>
<iframe src="https://claudskills.com/embed/metabolite-kegg-pathway-enrichment.html" width="100%" height="160" frameborder="0" loading="lazy" title="ClaudSkills: Metabolite Kegg Pathway Enrichment"></iframe>

Security scan

Grade A · scanned 2026-07-06 — free static scan against the OWASP Agentic Skills Top 10.

No risk patterns were found in any of the ten OWASP-aligned categories. How grading works ›

Show this grade on your repo (click to copy):

[![Security: A](https://img.shields.io/badge/Security-A-2e7d32)](https://claudskills.com/skills/metabolite-kegg-pathway-enrichment/#security)

Free. No spam. Unsubscribe in one click.

More Science & Research skills

Browse all Science & Research skills in the ClaudSkills registry, or explore these other picks from the same category:

Browse all Science & Research skills → Top 100 skills
Part of ClaudSkills — the open registry for Claude Skills & Claude Code Skills.  ·  What's New  ·  Install guide  ·  About  ·  llms.txt

Part of Acreator Store — Adam Lankamer's AI tools: PerfectStudio · Ucaption · UTagger · AutoXPoster · TestYourSkills · AutomationFlows · Au Naturel · Telegram @acreatorstore

Categories

Use cases

Popular tags

Learn

Site