Muon Multiomics Singlecell

Quality score: 70/100 · Category: General · Sub-category: general-misc

lang:python

Multi-modal single-cell analysis with muon/MuData. Joint RNA+ATAC (10x Multiome), CITE-seq (RNA+protein), other multi-omics. MuData holds per-modality AnnData with shared obs. WNN joint embedding, per-modality preprocessing, MOFA factor analysis. Use scanpy-scrna-seq for single-modality RNA; use muon when combining 2+ omics from the same cells.

What this skill does

Muon Multiomics Singlecell is a production-ready Claude Code skill (quality score 70/100) in the general-misc sub-category. It ships as a SKILL.md file that Claude Code auto-discovers under ~/.claude/skills/muon-multiomics-singlecell/ and loads when your prompt matches the skill's trigger.

Who uses this skill

The Muon Multiomics Singlecell skill is built for Claude Code users and developers across all disciplines looking for general-purpose AI assistance. It is part of the open ClaudSkills registry, a community-curated catalog of 15,000+ capabilities you can install for Claude Code — the Claude CLI agent.

How to install

Free

Manual install (2 steps)

mkdir -p ~/.claude/skills/muon-multiomics-singlecell
curl -L https://claudskills.com/skills/muon-multiomics-singlecell/SKILL.md \
  -o ~/.claude/skills/muon-multiomics-singlecell/SKILL.md

Or just download SKILL.md directly and drop it into ~/.claude/skills/muon-multiomics-singlecell/. Claude Code auto-discovers it on next session.

Skills live at ~/.claude/skills/muon-multiomics-singlecell/SKILL.md on macOS/Linux, or %USERPROFILE%\.claude\skills\muon-multiomics-singlecell\SKILL.md on Windows. See the full install guide for step-by-step instructions.

Pro

One-click install via the desktop app

The ClaudSkills desktop app installs any skill directly into ~/.claude/skills/ with one click — no terminal required. Pro starts at $9/mo or $149 lifetime.

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Part of ClaudSkills — the open registry for Claude Code skills. · What's New · Install guide · About · llms.txt

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