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Nfcore Scrnaseq Wrapper

Category: Dev Tools  ·  Sub-category: tools-misc  ·  Last updated:
Wrapper skill for running nf-core/scrnaseq 4.1.0 upstream single-cell RNA-seq preprocessing from FASTQ with strict preflight, reproducibility outputs, and downstream handoff to ClawBio scRNA
Security AStatic scan found no risk patternsHow grading works ›

From the source SKILL.md

You are nfcore-scrnaseq-wrapper, a specialised ClawBio agent for upstream single-cell RNA-seq preprocessing from FASTQ using the nf-core/scrnaseq Nextflow pipeline.

What this skill does

Nfcore Scrnaseq Wrapper is a community-contributed Claude Code skill in the tools-misc sub-category. It ships as a SKILL.md file that Claude Code auto-discovers under ~/.claude/skills/nfcore-scrnaseq-wrapper/ and loads when your prompt matches the skill's trigger.

Who uses this skill

The Nfcore Scrnaseq Wrapper Claude Code skill is built for developers, power users, and teams automating repetitive workflows and improving developer experience. It's part of ClaudSkills (also referred to as Claude Skills or Claude Code Skills) — the open community-curated registry of 196,000+ SKILL.md files for Anthropic's Claude Code agent and the wider Claude ecosystem (Claude API, Claude Agent SDK).

How to install

Free

Manual install (2 steps)

mkdir -p ~/.claude/skills/nfcore-scrnaseq-wrapper
curl -L https://claudskills.com/skills/nfcore-scrnaseq-wrapper/SKILL.md \
  -o ~/.claude/skills/nfcore-scrnaseq-wrapper/SKILL.md

Or just download SKILL.md directly and drop it into ~/.claude/skills/nfcore-scrnaseq-wrapper/. Claude Code auto-discovers it on next session.

Skills live at ~/.claude/skills/nfcore-scrnaseq-wrapper/SKILL.md on macOS/Linux, or %USERPROFILE%\.claude\skills\nfcore-scrnaseq-wrapper\SKILL.md on Windows. See the full install guide for step-by-step instructions.

Telegram

📱 Install from your phone or desktop Telegram

Open @claudskills_bot on Telegram, tap Open Desktop App, and the desktop app installs this skill for you. Or share the bot link with a colleague — they get the same one-tap install. Learn more →

Pro

One-click install via the desktop app

The ClaudSkills desktop app installs any skill directly into ~/.claude/skills/ with one click — no terminal required. Pro starts at $9/mo or $149 lifetime.

Pro

For the full experience including quality scoring and one-click install features for each skill — upgrade to Pro.

See pricing → Download desktop app

Frequently asked questions

How do I install the Nfcore Scrnaseq Wrapper Claude Code skill?
Install via the ClaudSkills desktop app (one click) or copy SKILL.md from the source repository to ~/.claude/skills/nfcore-scrnaseq-wrapper/SKILL.md and restart Claude Code. Both flows are detailed at claudskills.com/install/.
What does the Nfcore Scrnaseq Wrapper skill do?
Wrapper skill for running nf-core/scrnaseq 4.1.0 upstream single-cell RNA-seq preprocessing from FASTQ with strict preflight, reproducibility outputs, and downstream handoff to ClawBio scRNA
Is this skill free to install?
Yes. ClaudSkills is an open registry — every skill keeps its source repository's license, and manual install via copy is free. ClaudSkills Pro ($9/mo, $79/yr, or $149 one-time) adds one-click install via the desktop app and a multi-signal Quality Score.
When should I use the Nfcore Scrnaseq Wrapper skill?
Use Nfcore Scrnaseq Wrapper when your Claude Code task falls under the Dev Tools category — specifically in the tools misc area. Claude Code auto-discovers installed skills and invokes the right one based on the task description, so you can also ask Claude directly (e.g. "use Nfcore Scrnaseq Wrapper" or describe the task and let Claude pick). Browse related skills at /category/tools/.
What is a Claude Code skill and how does the Nfcore Scrnaseq Wrapper skill fit in?
A Claude Code skill is a SKILL.md file that lives under ~/.claude/skills/<name>/ and tells the Claude Code CLI agent how to perform a specific task (instructions, prompts, allowed tools). Skills are auto-discovered at session start. Nfcore Scrnaseq Wrapper is one of 67,000+ skills indexed in the open ClaudSkills catalog, classified under the Dev Tools category. Learn more at /learn/what-is-a-claude-skill/.

Attribution & license

Cite this skill

If you reference this skill in a blog post, paper, or documentation, you can cite it as:

APA
ClawBio. (2026). Nfcore Scrnaseq Wrapper [Claude Code skill]. ClaudSkills. https://claudskills.com/skills/nfcore-scrnaseq-wrapper/
BibTeX
@misc{nfcore-scrnaseq-wrapper-2026,
  author    = {ClawBio},
  title     = {Nfcore Scrnaseq Wrapper [Claude Code skill]},
  year      = {2026},
  publisher = {ClaudSkills},
  url       = {https://claudskills.com/skills/nfcore-scrnaseq-wrapper/}
}

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Security scan

Grade A · scanned 2026-09-28 — free static scan against the OWASP Agentic Skills Top 10.

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