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Pathway Database Filtering By Detection

Category: Science & Research  ·  Sub-category: science-misc  ·  Last updated:
Use when you have run a metabolomics experiment with incomplete coverage of a reference pathway database (e.g., 10–100% of database metabolites detected), and you plan to use ORA for pathway enrichment. The skill is essential if your detection method has known sensitivity limits (e.
Security AStatic scan found no risk patternsHow grading works ›

About this skill (catalog notes)

Pathway Database Filtering By Detection includes explicit scope boundaries (an explicit 'when not to use' or 'out of scope' section); worked examples; at least one code block. The SKILL.md runs to about 942 words, in the catalog's typical mid-range.

Source
holobiomicslab.cnrs.fr
License
Apache-2.0
Original author
HolobiomicsLab
Indexed lastmod
Catalog position
Science & Research · science-misc
Indexed related skills
10

How Pathway Database Filtering By Detection fits the catalog

Pathway Database Filtering By Detection sits in the Science & Research category under the science-misc sub-topic in the ClaudSkills catalog. There are 10 related skills indexed alongside it; comparing a few before installing usually reveals which fits your workflow best.

These notes are auto-generated from features detected in the SKILL.md file and from this catalog's structure — they aren't part of the source repository.

What this skill does

Pathway Database Filtering By Detection is a community-contributed Claude Code skill in the science-misc sub-category. It ships as a SKILL.md file that Claude Code auto-discovers under ~/.claude/skills/pathway-database-filtering-by-detection/ and loads when your prompt matches the skill's trigger.

When to invoke it: Use when you have run a metabolomics experiment with incomplete coverage of a reference pathway database (e.g.

Who uses this skill

The Pathway Database Filtering By Detection Claude Code skill is built for researchers, data scientists, academics, and analysts working with complex data and scientific literature. It's part of ClaudSkills (also referred to as Claude Skills or Claude Code Skills) — the open community-curated registry of 146,000+ SKILL.md files for Anthropic's Claude Code agent and the wider Claude ecosystem (Claude API, Claude Agent SDK).

How to install

Free

Manual install (2 steps)

mkdir -p ~/.claude/skills/pathway-database-filtering-by-detection
curl -L https://claudskills.com/skills/pathway-database-filtering-by-detection/SKILL.md \
  -o ~/.claude/skills/pathway-database-filtering-by-detection/SKILL.md

Or just download SKILL.md directly and drop it into ~/.claude/skills/pathway-database-filtering-by-detection/. Claude Code auto-discovers it on next session.

Skills live at ~/.claude/skills/pathway-database-filtering-by-detection/SKILL.md on macOS/Linux, or %USERPROFILE%\.claude\skills\pathway-database-filtering-by-detection\SKILL.md on Windows. See the full install guide for step-by-step instructions.

Telegram

📱 Install from your phone or desktop Telegram

Open @claudskills_bot on Telegram, tap Open Desktop App, and the desktop app installs this skill for you. Or share the bot link with a colleague — they get the same one-tap install. Learn more →

Pro

One-click install via the desktop app

The ClaudSkills desktop app installs any skill directly into ~/.claude/skills/ with one click — no terminal required. Pro starts at $9/mo or $149 lifetime.

Pro

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See pricing → Download desktop app

Frequently asked questions

How do I install the Pathway Database Filtering By Detection Claude Code skill?
Install via the ClaudSkills desktop app (one click) or copy SKILL.md from the source repository to ~/.claude/skills/pathway-database-filtering-by-detection/SKILL.md and restart Claude Code. Both flows are detailed at claudskills.com/install/.
What does the Pathway Database Filtering By Detection skill do?
Use when you have run a metabolomics experiment with incomplete coverage of a reference pathway database (e.g., 10–100% of database metabolites detected), and you plan to use ORA for pathway enrichment. The skill is essential if your detection method has known sensitivity limits (e.
Is this skill free to install?
Yes. ClaudSkills is an open registry — every skill keeps its source repository's license, and manual install via copy is free. ClaudSkills Pro ($9/mo, $79/yr, or $149 one-time) adds one-click install via the desktop app and a multi-signal Quality Score.
When should I use the Pathway Database Filtering By Detection skill?
Use Pathway Database Filtering By Detection when your Claude Code task falls under the Science & Research category — specifically in the science misc area. Claude Code auto-discovers installed skills and invokes the right one based on the task description, so you can also ask Claude directly (e.g. "use Pathway Database Filtering By Detection" or describe the task and let Claude pick). Browse related skills at /category/science/.
What is a Claude Code skill and how does the Pathway Database Filtering By Detection skill fit in?
A Claude Code skill is a SKILL.md file that lives under ~/.claude/skills/<name>/ and tells the Claude Code CLI agent how to perform a specific task (instructions, prompts, allowed tools). Skills are auto-discovered at session start. Pathway Database Filtering By Detection is one of 67,000+ skills indexed in the open ClaudSkills catalog, classified under the Science & Research category. Learn more at /learn/what-is-a-claude-skill/.

Attribution & license

Cite this skill

If you reference this skill in a blog post, paper, or documentation, you can cite it as:

APA
HolobiomicsLab. (2026). Pathway Database Filtering By Detection [Claude Code skill]. ClaudSkills. https://claudskills.com/skills/pathway-database-filtering-by-detection/
BibTeX
@misc{pathway-database-filtering-by-detection-2026,
  author    = {HolobiomicsLab},
  title     = {Pathway Database Filtering By Detection [Claude Code skill]},
  year      = {2026},
  publisher = {ClaudSkills},
  url       = {https://claudskills.com/skills/pathway-database-filtering-by-detection/}
}

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Security scan

Grade A · scanned 2026-07-06 — free static scan against the OWASP Agentic Skills Top 10.

No risk patterns were found in any of the ten OWASP-aligned categories. How grading works ›

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More Science & Research skills

Browse all Science & Research skills in the ClaudSkills registry, or explore these other picks from the same category:

Browse all Science & Research skills → Top 100 skills
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