ClaudSkills / Science & Research / biology-medicine

Star Rna Seq Aligner

Quality score: 70/100 · Category: Science & Research · Sub-category: biology-medicine

Splice-aware RNA-seq aligner producing sorted BAM and splice junction tables. Builds genome index, runs two-pass alignment for better junctions. Outputs sorted BAM, junctions (SJ.out.tab), stats (Log.final.out), optional gene counts. Use Salmon for fast pseudoalignment; STAR when a BAM is needed for variant calling, IGV, or ENCODE pipelines.

What this skill does

Star Rna Seq Aligner is a production-ready Claude Code skill (quality score 70/100) in the biology-medicine sub-category. It ships as a SKILL.md file that Claude Code auto-discovers under ~/.claude/skills/star-rna-seq-aligner/ and loads when your prompt matches the skill's trigger.

Who uses this skill

The Star Rna Seq Aligner skill is built for researchers, data scientists, academics, and analysts working with complex data and scientific literature. It is part of the open ClaudSkills registry, a community-curated catalog of 15,000+ capabilities you can install for Claude Code — the Claude CLI agent.

How to install

Free

Manual install (2 steps)

mkdir -p ~/.claude/skills/star-rna-seq-aligner
curl -L https://claudskills.com/skills/star-rna-seq-aligner/SKILL.md \
  -o ~/.claude/skills/star-rna-seq-aligner/SKILL.md

Or just download SKILL.md directly and drop it into ~/.claude/skills/star-rna-seq-aligner/. Claude Code auto-discovers it on next session.

Skills live at ~/.claude/skills/star-rna-seq-aligner/SKILL.md on macOS/Linux, or %USERPROFILE%\.claude\skills\star-rna-seq-aligner\SKILL.md on Windows. See the full install guide for step-by-step instructions.

Pro

One-click install via the desktop app

The ClaudSkills desktop app installs any skill directly into ~/.claude/skills/ with one click — no terminal required. Pro starts at $9/mo or $149 lifetime.

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Part of ClaudSkills — the open registry for Claude Code skills. · What's New · Install guide · About · llms.txt

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