Transcript Quantification Integration

Q: What is a Claude Code skill and how does the Transcript Quantification Integration skill fit in?

A Claude Code skill is a SKILL.md file that lives under ~/.claude/skills/<name>/ and tells the Claude Code CLI agent how to perform a specific task (instructions, prompts, allowed tools). Skills are auto-discovered at session start. Transcript Quantification Integration is one of 67,000+ skills indexed in the open ClaudSkills catalog, classified under the Content category. Learn more at https://claudskills.com/learn/what-is-skill-md/.

Category: Content · Sub-category: content-misc · Last updated: 2026-06-25

type:integration

Use when you have transcript quantification output (TPM or raw counts) from a pseudo-aligner (Salmon or kallisto) and an ioe/ioi event definition file from SUPPA2's generateEvents step, and you need to calculate PSI values—the relative inclusion level of alternative splicing events—across multiple.

Security AStatic scan found no risk patternsHow grading works ›

About this skill (catalog notes)

Transcript Quantification Integration includes explicit scope boundaries (an explicit 'when not to use' or 'out of scope' section); worked examples; at least one code block. The SKILL.md runs to about 863 words, in the catalog's typical mid-range.

Source: holobiomicslab.cnrs.fr
License: Apache-2.0
Original author: HolobiomicsLab
Indexed lastmod: 2026-06-25
Catalog position: Content · content-misc
Indexed related skills: 10

How Transcript Quantification Integration fits the catalog

Transcript Quantification Integration sits in the Content category under the content-misc sub-topic in the ClaudSkills catalog. There are 10 related skills indexed alongside it; comparing a few before installing usually reveals which fits your workflow best.

These notes are auto-generated from features detected in the SKILL.md file and from this catalog's structure — they aren't part of the source repository.

What this skill does

Transcript Quantification Integration is a community-contributed Claude Code skill in the content-misc sub-category. It ships as a SKILL.md file that Claude Code auto-discovers under ~/.claude/skills/transcript-quantification-integration/ and loads when your prompt matches the skill's trigger.

When to invoke it: Use when you have transcript quantification output (TPM or raw counts) from a pseudo-aligner (Salmon or kallisto) and an ioe/ioi event definition file from SUPPA2's generateEvents step, and you need to calculate PSI values—the relative inclusion level of alternative splicing events—across multiple.

Who uses this skill

The Transcript Quantification Integration Claude Code skill is built for content creators, marketers, copywriters, SEO professionals, and editorial teams. It's part of ClaudSkills (also referred to as Claude Skills or Claude Code Skills) — the open community-curated registry of 146,000+ SKILL.md files for Anthropic's Claude Code agent and the wider Claude ecosystem (Claude API, Claude Agent SDK).

How to install

Free

Manual install (2 steps)

mkdir -p ~/.claude/skills/transcript-quantification-integration
curl -L https://claudskills.com/skills/transcript-quantification-integration/SKILL.md \
  -o ~/.claude/skills/transcript-quantification-integration/SKILL.md

Or just download SKILL.md directly and drop it into ~/.claude/skills/transcript-quantification-integration/. Claude Code auto-discovers it on next session.

Skills live at ~/.claude/skills/transcript-quantification-integration/SKILL.md on macOS/Linux, or %USERPROFILE%\.claude\skills\transcript-quantification-integration\SKILL.md on Windows. See the full install guide for step-by-step instructions.

📱 Install from your phone or desktop Telegram

Open @claudskills_bot on Telegram, tap Open Desktop App, and the desktop app installs this skill for you. Or share the bot link with a colleague — they get the same one-tap install. Learn more →

Pro

One-click install via the desktop app

The ClaudSkills desktop app installs any skill directly into ~/.claude/skills/ with one click — no terminal required. Pro starts at $9/mo or $149 lifetime.

Pro

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Frequently asked questions

How do I install the Transcript Quantification Integration Claude Code skill?

Install via the ClaudSkills desktop app (one click) or copy SKILL.md from the source repository to ~/.claude/skills/transcript-quantification-integration/SKILL.md and restart Claude Code. Both flows are detailed at claudskills.com/install/.

What does the Transcript Quantification Integration skill do?

Is this skill free to install?

Yes. ClaudSkills is an open registry — every skill keeps its source repository's license, and manual install via copy is free. ClaudSkills Pro ($9/mo, $79/yr, or $149 one-time) adds one-click install via the desktop app and a multi-signal Quality Score.

When should I use the Transcript Quantification Integration skill?

Use Transcript Quantification Integration when your Claude Code task falls under the Content category — specifically in the content misc area. Claude Code auto-discovers installed skills and invokes the right one based on the task description, so you can also ask Claude directly (e.g. "use Transcript Quantification Integration" or describe the task and let Claude pick). Browse related skills at /category/content/.

What is a Claude Code skill and how does the Transcript Quantification Integration skill fit in?

A Claude Code skill is a SKILL.md file that lives under ~/.claude/skills/<name>/ and tells the Claude Code CLI agent how to perform a specific task (instructions, prompts, allowed tools). Skills are auto-discovered at session start. Transcript Quantification Integration is one of 67,000+ skills indexed in the open ClaudSkills catalog, classified under the Content category. Learn more at /learn/what-is-a-claude-skill/.

Attribution & license

Source: https://github.com/HolobiomicsLab/asb-skill-collections/blob/HEAD/collections/transcriptomics/v1/skills/transcript-quantification-integration/SKILL.md
License: Apache-2.0
Author: HolobiomicsLab
Website: https://holobiomicslab.cnrs.fr

Cite this skill

If you reference this skill in a blog post, paper, or documentation, you can cite it as:

APA

HolobiomicsLab. (2026). Transcript Quantification Integration [Claude Code skill]. ClaudSkills. https://claudskills.com/skills/transcript-quantification-integration/

BibTeX

@misc{transcript-quantification-integration-2026,
  author    = {HolobiomicsLab},
  title     = {Transcript Quantification Integration [Claude Code skill]},
  year      = {2026},
  publisher = {ClaudSkills},
  url       = {https://claudskills.com/skills/transcript-quantification-integration/}
}

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Security scan

Grade A · scanned 2026-07-06 — free static scan against the OWASP Agentic Skills Top 10.

No risk patterns were found in any of the ten OWASP-aligned categories. How grading works ›

✓ Prompt injection
✓ Data exfiltration
✓ Supply chain
✓ Reverse shell
✓ Credentials
✓ Execution
✓ Filesystem
✓ Persistence
✓ Obfuscation
✓ Network

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