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Protenix

Category: General  ·  Sub-category: general-misc  ·  Last updated:
Structure prediction with Protenix, an open AlphaFold3 reproduction. Use this skill when: (1) Predicting complex structures with an AF3-class model, (2) Wanting an open alternative to AF3 alongside Boltz and Chai, (3) Validating designed binder-target complexes.
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From the source SKILL.md

[Protenix](https://github.com/bytedance/Protenix) is ByteDance's open PyTorch reproduction of AlphaFold3 (Apache 2.0). It is an AF3-class complex predictor, useful next to boltz and chai for cross-checking designed complexes. Runnable through biomodals.

What this skill does

Protenix is a community-contributed Claude Code skill in the general-misc sub-category. It ships as a SKILL.md file that Claude Code auto-discovers under ~/.claude/skills/protenix/ and loads when your prompt matches the skill's trigger.

Who uses this skill

The Protenix Claude Code skill is built for Claude Code users and developers across all disciplines looking for general-purpose AI assistance. It's part of ClaudSkills (also referred to as Claude Skills or Claude Code Skills) — the open community-curated registry of 174,000+ SKILL.md files for Anthropic's Claude Code agent and the wider Claude ecosystem (Claude API, Claude Agent SDK).

How to install

Free

Manual install (2 steps)

mkdir -p ~/.claude/skills/protenix
curl -L https://claudskills.com/skills/protenix/SKILL.md \
  -o ~/.claude/skills/protenix/SKILL.md

Or just download SKILL.md directly and drop it into ~/.claude/skills/protenix/. Claude Code auto-discovers it on next session.

Skills live at ~/.claude/skills/protenix/SKILL.md on macOS/Linux, or %USERPROFILE%\.claude\skills\protenix\SKILL.md on Windows. See the full install guide for step-by-step instructions.

Telegram

📱 Install from your phone or desktop Telegram

Open @claudskills_bot on Telegram, tap Open Desktop App, and the desktop app installs this skill for you. Or share the bot link with a colleague — they get the same one-tap install. Learn more →

Pro

One-click install via the desktop app

The ClaudSkills desktop app installs any skill directly into ~/.claude/skills/ with one click — no terminal required. Pro starts at $9/mo or $149 lifetime.

Pro

For the full experience including quality scoring and one-click install features for each skill — upgrade to Pro.

See pricing → Download desktop app

Frequently asked questions

How do I install the Protenix Claude Code skill?
Install via the ClaudSkills desktop app (one click) or copy SKILL.md from the source repository to ~/.claude/skills/protenix/SKILL.md and restart Claude Code. Both flows are detailed at claudskills.com/install/.
What does the Protenix skill do?
Structure prediction with Protenix, an open AlphaFold3 reproduction. Use this skill when: (1) Predicting complex structures with an AF3-class model, (2) Wanting an open alternative to AF3 alongside Boltz and Chai, (3) Validating designed binder-target complexes.
Is this skill free to install?
Yes. ClaudSkills is an open registry — every skill keeps its source repository's license, and manual install via copy is free. ClaudSkills Pro ($9/mo, $79/yr, or $149 one-time) adds one-click install via the desktop app and a multi-signal Quality Score.
When should I use the Protenix skill?
Use Protenix when your Claude Code task falls under the General category — specifically in the general misc area. Claude Code auto-discovers installed skills and invokes the right one based on the task description, so you can also ask Claude directly (e.g. "use Protenix" or describe the task and let Claude pick). Browse related skills at /category/general/.
What is a Claude Code skill and how does the Protenix skill fit in?
A Claude Code skill is a SKILL.md file that lives under ~/.claude/skills/<name>/ and tells the Claude Code CLI agent how to perform a specific task (instructions, prompts, allowed tools). Skills are auto-discovered at session start. Protenix is one of 67,000+ skills indexed in the open ClaudSkills catalog, classified under the General category. Learn more at /learn/what-is-a-claude-skill/.

Attribution & license

Cite this skill

If you reference this skill in a blog post, paper, or documentation, you can cite it as:

APA
bg-szy. (2026). Protenix [Claude Code skill]. ClaudSkills. https://claudskills.com/skills/protenix/
BibTeX
@misc{protenix-2026,
  author    = {bg-szy},
  title     = {Protenix [Claude Code skill]},
  year      = {2026},
  publisher = {ClaudSkills},
  url       = {https://claudskills.com/skills/protenix/}
}

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Security scan

Grade A · scanned 2026-08-02 — free static scan against the OWASP Agentic Skills Top 10.

The scan flagged 1 of 10 categories (filesystem), including lower-severity patterns. Patterns shown inside code fences are weighted as examples rather than instructions — read the grading methodology for what this does and does not guarantee.

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Browse all General skills in the ClaudSkills registry, or explore these other picks from the same category:

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Part of ClaudSkills — the open registry for Claude Skills & Claude Code Skills.  ·  What's New  ·  Install guide  ·  About  ·  llms.txt

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