Analyze data with `phylogenetic-tree-styler` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.
Generate forest plots for meta-analysis of continuous data. Input a CSV file containing study names, means, standard deviations, and sample sizes for experimental and control…
A local text formatting organizer for biomedical/academic writing; use it when you need to clean whitespace/line endings while preserving Markdown structures or when normalizing…
Generate tailored AI-focused cover letters using the PSI (Problem-Solution-Impact) methodology. Use when: (1) User wants to create cover letters for AI/ML job applications, (2)…
Design a structured case-control study framework with explicit source population logic, control selection rules, matching decisions, exposure measurement planning, and…
Use when correcting batch effects in merged bulk expression matrices with sample-level batch metadata while preserving biological group structure and generating before-and-after…
Access ChEA3 and Harmonizome ChEA data for transcription factor enrichment analysis and metadata retrieval.
Access Cellosaurus database for cell line information and release data. Invoke when user asks to search cell lines, get cell line details by accession, or check database release…
Generates a weekly academic literature report based on keywords using PubMed. Use when the user wants to track recent research progress on a specific topic, automatically…
Generate professional poster design concepts and optimized image-generation prompts, then automatically run a drawing script to produce the final poster image when a user needs a…
Use when drafting patient discharge summaries, creating personalized discharge instructions, simulating post-discharge outcomes, reducing hospital readmissions, or optimizing care…
Intelligent medical abbreviation disambiguation tool that resolves ambiguous acronyms using clinical context, specialty-specific knowledge, and document-level semantic analysis.
Generates a first draft of a clinical meta-analysis paper. Input the research report (including Methods and Results sections), language, and title to automatically generate a…
Retrieves comprehensive gene information including PubMed publication counts, NCBI summaries, and Ensembl transcript data. Supports batch processing and file input.
Designs a translational blueprint for moving a biomedical finding toward diagnosis, prognosis, treatment response prediction, patient stratification, or therapeutic development,…
Generate publication-ready baseline characteristics tables (Table 1) for clinical research papers with automatic variable type detection, appropriate statistics (mean±SD,…
Simulate standardized patient encounters for medical training, supporting OSCE-style history-taking practice, communication skills rehearsal, and educational debriefing.
Statistical analysis and reporting for experimental datasets; use when you need to interpret experimental results, test significance (t-tests/ANOVA), or generate reproducible…
Precision editing tool that reduces abstract word count through intelligent compression techniques, maintaining scientific rigor while meeting strict journal and conference…
Convert between IUPAC names, SMILES strings, molecular formulas, and common names for chemical compounds.
Query the ClinicalTrials.gov API v2 to search for clinical trials, retrieve detailed study protocols, and analyze recruitment status; use when you need to find trials by…
Analyzes academic paper abstracts to recommend optimal journals for submission, considering impact factors, scope alignment, and domain expertise.
Add accurate, publication-ready scale bars to microscopy images given pixel-to-unit calibration data.
Generates complete FAERS pharmacovigilance study designs for one-drug whole-profile safety mapping using signal detection, subgroup analysis, onset/seriousness characteri — from…
Use Biopython to read/write/convert biological sequence files (FASTA/GenBank/FASTQ, etc.) and perform basic sequence operations; use when you need reliable sequence I/O,…
Assess bias in medical prediction model studies using PROBAST tool. Use when user wants to evaluate the quality or risk of bias of a medical paper (text or PDF).
Create, edit, and extract content from PowerPoint (.pptx) files; use when you need to generate slides programmatically, update existing decks, or export slide previews.
Quickly judges whether a biomedical paper is worth deep reading by screening for question fit, design quality, sample adequacy, methodological novelty, and reproducibility value.
Basic sample size estimator for clinical research planning. Computes per-group and total N for two-sample/paired t-tests, chi-square tests, and proportion comparisons, reporting…
Structures and writes discussion sections for academic papers and research reports. Use when writing a discussion section, interpreting research results, connecting findings to…
Detect copy number variations from whole genome sequencing data and generate publication-quality genome-wide CNV plots.
Analyze funding abstracts and project metadata to identify topic shifts and forecast near-term grant priorities.
Converts biomedical table content into clear manuscript or presentation narrative by prioritizing meaningful patterns, contrasts, and interpretation boundaries rather than…
Use when evaluating diagnostic biomarker performance from case-control expression data with logistic regression and ROC curves, exporting coefficient and AUC tables together with…
Optimizes manuscript titles and abstracts for information density, factual accuracy, and submission fit in biomedical research writing.
Generates a PROSPERO-compliant Meta-analysis protocol based on Title and PICOS. Use when the user wants to write a protocol for a systematic review or meta-analysis.
Clinical Research Bias Assessment - Case-Control Study (NOS) v2.3.0. Use when you need to assess the bias of a case-control study using the Newcastle-Ottawa Scale (NOS) criteria,…
1. Confirm the user objective, required inputs, and non-negotiable constraints before doing detailed work. 2.
Assesses whether a medical research topic is worth starting now by separating true novelty from pseudo-novelty, auditing real feasibility under stated resource constraints, and…
Sequence alignment and alignment file processing with Biopython (Bio.Align/Bio.AlignIO), triggered when you need global/local pairwise alignment, MSA read/write/format conversion,…
Generates complete comorbidity-oriented shared-biomarker bioinformatics research designs from a user-provided disease pair and validation direction.
Generates complete phenotype-scoring bioinformatics research designs for any disease context and any user-defined phenotype, pathway, process, signature, or molecular pro — from…
Sort laboratory chemicals into safe storage groups by hazard classification (acids, bases, oxidizers, flammables, toxics).
Generates comprehensive academic introductions for biological pathways, including signaling processes, markers, and inhibitors.
Calculate medical date windows including gestational age, estimated delivery dates, and follow-up visit scheduling.
Use when cleaning clinical trial data, preparing data for FDA/EMA submission, standardizing SDTM datasets, handling missing values in clinical studies, detecting outliers in lab…
Generates the Methods section for a meta-analysis paper, including search strategy, screening, quality assessment, data extraction, and statistical analysis.
Advanced Biopython modules for motifs, population genetics, sequence utilities, restriction analysis, clustering, and GenomeDiagram visualization; use when you need extended…
Acknowledges limitations in sample, design, measurement, and validation in a professional way that improves credibility without undermining the whole paper.
Comprehensive analytics tool for forecasting breakthrough therapeutic technologies by integrating multi-dimensional data sources including clinical development pipelines,…
Spreadsheet processing and analysis for CSV/Excel; trigger when users ask to merge/clean tabular data, run statistics, add/edit Excel formulas, apply formatting, generate charts,…
Use when building XGBoost models on tabular data and returning feature importance ranking outputs. Supports binary classification and regression with automatic task detection,…
Automatically find references for academic paper Markdown files. Reads full paper text, identifies each knowledge point requiring citation (epidemiological data, mechanism…
Bioinformatics literature analysis workflow extraction and customized plan design. Triggered only when the user explicitly refers to a specific paper: the user requests extracting…
Expert system for generating comprehensive biomedical phenotype introductions with structured academic content.
Use when screening differentially expressed genes from a bulk expression matrix between two user-specified groups, producing DEG tables, a volcano plot, and a clustered heatmap.
Search and retrieve scientific preprints from arXiv; use it when you need to find papers by keyword/author/category, fetch metadata (abstract, DOI, PDF URL), or download PDFs for…
Generates the "Risk of Bias" results section for a meta-analysis based on assessment tables and statistics.
Use when estimating immune infiltration from bulk RNA-seq expression matrices with ssGSEA/GSVA, comparing case versus control groups, and generating downstream immune-score…
Access Scite.ai Smart Citations to classify how a paper is cited (supporting, contrasting, mentioning) and assess scientific claims; use it when you need to evaluate a paper’s…