Reads a paper figure by figure before re-integrating the full narrative, so the user can identify the core findings quickly and check whether each visual actually supports the…
Use when constructing a prognosis nomogram from survival-related clinical predictors, exporting the nomogram bundle and C-index table, and optionally rendering the final nomogram…
Organize requirements into Markdown/JSON mind map structures; use when you need a hierarchical outline for mind map tools (e.g., XMind, ProcessOn, FreeMind) or for documentation…
Assists researchers in generating INPLASY registration content for meta-analyses from a title and optional protocol. Use when the user wants to draft a INPLASY registration form.
Assemble 6 sub-figures (A–F) into a high-resolution composite figure with consistent labels, padding, and publication-ready DPI.
Converts biomedical table content into clear manuscript or presentation narrative by prioritizing meaningful patterns, contrasts, and interpretation boundaries rather than…
Process images for web development — resize, crop, trim whitespace, convert formats (PNG/WebP/JPG), optimise file size, generate thumbnails, create OG card images.
Generate professional slide-deck SVG images (not PPTX/PDF) when users ask to “create slides / slide deck / PPT” and need image outputs.
Use when analyzing bulk RNA-seq or microarray expression data to identify differentially expressed genes between two biological groups (case vs control), with volcano plots and…
Use when you need a standardized R CLI workflow to run two-class SVM-RFE feature ranking on an expression-like matrix, choose an informative feature count from cross-validated…
Use when generating Kaplan-Meier survival curves from tabular survival data containing time, event status, and a precomputed risk group.
Analyze data with `volcano-plot-labeler` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.
Access over 200M protein structures from AlphaFold DB; use when you need to retrieve predicted 3D structures (PDB/mmCIF), confidence metrics (pLDDT/PAE), or protein metadata by…
Adjust academic paper formatting and convert between DOCX/LaTeX/Markdown when you need to meet a journal or school template requirement.
Use when generating Sankey or alluvial plots from sample annotation tables where rows are samples and selected columns are categorical stages such as risk group, response status,…
Evaluates the quality of cohort studies using the Newcastle-Ottawa Scale (NOS). Use when the user provides a cohort study article or text and needs a quality assessment report.
Access JASPAR database for transcription factor binding profiles (matrices), collections, and species via REST API.
Perform basic local PDF operations (merge, split, extract pages/text/tables, create) when users request offline PDF processing without external services.
Download PubMed/PMC literature using officially permitted PMC methods. Whenever the user wants to download PMC full text, batch-retrieve PMC Open Access Subset articles, save full…
Statistical analysis and reporting for experimental datasets; use when you need to interpret experimental results, test significance (t-tests/ANOVA), or generate reproducible…
Analyze data with `pseudotime-trajectory-viz` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.
Prepare FDA/EMA regulatory submissions (IND/NDA/BLA/510(k)/PMA/MAA) in CTD format. Generate module outlines (Modules 1-5), run ICH compliance checks (ALCOA+, E6 GCP, Q1-Q12),…
Evidence-Based Medicine diagnostic test calculator. Computes sensitivity, specificity, PPV, NPV, likelihood ratios, NNT, and pre/post-test probability from 2x2 contingency table…
Use when building a weighted gene co-expression network from a bulk expression matrix and a sample group file, filtering variable genes by MAD, identifying co-expression modules…
Create literature-report PPTX decks from PDF papers. Use when you must extract a paper’s metadata, summarize the study, interpret Results/Figures/Tables, and generate slides with…
Generate renderable, scientific-style SVG graphics directly from natural-language requirements (no image models).
Import local literature into a managed library; trigger when you need offline deduplication, tagging, and a searchable index.
Generate statistics for publication-year and journal distributions from local references or PDFs; use when you need standardized Year/Journal tables and a summary without any…
Generates complete conventional single-gene oncology research designs from a user-provided cancer context, target gene, and validation direction.
Extracts key meeting information in chronological order and outputs decisions and action items; use when you need meeting minutes, action tracking, or project sync notes from…
Draw ROB2 risk-of-bias plots, including a Traffic Light Plot and a Summary Bar Plot. Input is a CSV file with ROB2 assessments for each study; output are two PNG plot files.
Virtual gene knockout simulation using foundation models to predict transcriptional
Automates Risk of Bias 2 (ROB2) assessment for RCT papers by analyzing text against specific domains and synthesizing a report.
Generates professional interview titles and questions based on expert background and topic. Provides a structured workflow for interview preparation.
Designs internal, external, temporal, and functional validation strategies at the protocol stage for medical research studies.
Use when converting medical text between academic and patient-friendly tones, translating medical jargon for patients, adapting research papers for public audiences, or rewriting…
Monitor and summarize competitor clinical trial status changes from ClinicalTrials.gov.
Generates science popularization articles with titles and outlines based on medical topics and style preferences.
Convert HTML files or URLs to high-fidelity PDFs using Puppeteer; auto-detects or forces RTL for Hebrew/Arabic when RTL content is present.
Use facs gating viz style for data analysis workflows that need structured execution, explicit assumptions, and clear output boundaries.
Use smart journal monitor for evidence insight workflows that need structured execution, explicit assumptions, and clear output boundaries.
Analyze data with `metagenomic-krona-chart` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.
Academic paper reading and research development system for biomedical researchers. Finds papers via Semantic Scholar, reads with structured notes, tracks discussion insights, and…
Generates comprehensive academic introductions for biological pathways, including signaling processes, markers, and inhibitors.
Use when mapping patent claims to products, analyzing patent infringement, or preparing freedom-to-operate analyses.
A local text formatting organizer for biomedical/academic writing; use it when you need to clean whitespace/line endings while preserving Markdown structures or when normalizing…
Quickly judges whether a biomedical paper is worth deep reading by screening for question fit, design quality, sample adequacy, methodological novelty, and reproducibility value.
Analyze data with `phylogenetic-tree-styler` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.
Extracts and summarizes key takeaways from documents, meeting notes, articles, and other text content.
Rewrites technical research content into a structured lay summary that cross-disciplinary teams can quickly understand and act on.
Generates a PROSPERO-compliant Meta-analysis protocol based on Title and PICOS. Use when the user wants to write a protocol for a systematic review or meta-analysis.
Access ChEA3 and Harmonizome ChEA data for transcription factor enrichment analysis and metadata retrieval.
1. Confirm the user objective, required inputs, and non-negotiable constraints before doing detailed work. 2.
Use when finding open access journals, checking journal policies, or identifying predatory publishers.
Use when normalizing bulk gene or protein expression matrices with log2 transform, z-score standardization, or min-max scaling before downstream visualization or exploratory…
Rewrite drafts according to target writing style or target journal format. Triggers when user says "rewrite in XX style", "match this tone", "format for XX journal", "rewrite…
Design and simulate adaptive clinical trials with interim analyses, decision rules, and operating-characteristic summaries; use when planning adaptive designs or comparing…
Access the HGNC (HUGO Gene Nomenclature Committee) database to search for and retrieve gene information including symbols, names, IDs, and other metadata.
Generates a patient-friendly medical case report tweet from case images and disease name. Use when the user provides a medical case image and wants a structured report or tweet.
Calculate temperature excursion risks for cold chain transport. Assesses route risk, packaging suitability, and monitoring requirements for biological samples and pharmaceuticals…