1. Confirm the user objective, required inputs, and non-negotiable constraints before doing detailed work. 2.
Generates complete conventional single-gene oncology research designs from a user-provided cancer context, target gene, and validation direction.
Automated generation of baseline characteristics tables (Table 1) for clinical research papers.
Access JASPAR database for transcription factor binding profiles (matrices), collections, and species via REST API.
Generates structured meeting minutes from text transcripts. Use when the user provides text content and wants a structured summary with a signature.
Generate structured shift handover summaries from EHR records, highlighting critical events, vital sign changes, and pending tasks for incoming clinical staff.
Screens research papers based on title/abstract and inclusion criteria, providing a structured Yes/No/Maybe decision.
Filter and match postdoctoral fellowship opportunities based on applicant nationality, years since PhD, and research field from a curated database.
Writes Specific Aims pages for grant applications. Use when drafting or revising the Specific Aims page (NIH R01/R21/R03), NSF Project Summary, or equivalent for any major funding…
Check whether a paper’s Methods section contains all information needed for replication; use when preparing a manuscript for submission or reviewing methodological completeness.
Assists researchers in generating PROSPERO registration content for meta-analyses from a title and optional protocol. Use when the user wants to draft a PROSPERO registration form.
Generates complete conventional non-oncology diagnostic machine-learning research designs from a user-provided disease context, optional mechanism theme, and validation d — from…
Organize, back up, compress, split, and merge files/folders using rule-driven plans; use when you need safe previews, conflict handling, and verification before executing file…
Scrum-inspired paper review, revision, and R&R workflow. Handles docx/tex/md/PDF in English or Chinese.
Converts research text into a Mermaid technical roadmap flowchart. Use when the user provides research proposals, experiment designs, or scientific text and asks for a roadmap or…
Generates complete conventional single-gene oncology research designs from a user-provided cancer context, target gene, and validation direction.
Use when performing correlation analysis between two variables including Pearson and Spearman correlation methods.
Analyze data with `pseudotime-trajectory-viz` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.
Ranks papers by evidence family, methodological quality tier, validation depth, and claim discipline; assigns anchor, context-setting, mechanistic support, or caution citation…
Generates complete phenotype-scoring bioinformatics research designs for any disease context and any user-defined phenotype, pathway, process, signature, or molecular pro — from…
Kaplan-Meier survival analysis tool for clinical and biological research. Generates publication-ready survival curves with statistical tests.
Use when building a binary classification model from an expression matrix or other omics feature matrix with LASSO logistic regression, cross-validation, and coefficient path…
Generate professional slide-deck SVG images (not PPTX/PDF) when users ask to “create slides / slide deck / PPT” and need image outputs.
Generates complete two-sample Mendelian randomization research designs from a user-provided outcome, exposure or exposure family, and robustness direction.
Fetch and save the original HTML of scientific literature webpages when given a URL, DOI, or PubMed PMID (triggered when you need archival-grade page HTML for downstream parsing…
Guide for disposing specific chemical wastes into the correct colored waste containers, with safety precautions and regulatory compliance notes.
Generate Circos configuration files for circular genomics data visualization. Supports genomic variations (SNPs, CNVs, structural variants), cell-cell communication networks, and…
Parse clinical notes and recommend ICD-10-CM diagnosis codes and CPT procedure codes with confidence scoring.
Programmatic access to the PubChem database (via PUG-REST API and PubChemPy) for searching chemical compounds, retrieving physicochemical properties, performing structure…
Diffusion-based molecular docking to predict 3D ligand–protein binding poses (blind docking) with confidence scoring; use when you need pose prediction for drug discovery or…
Recommends target journals for manuscript submission by analyzing the paper topic/abstract and the journal distribution of similar PubMed literature; use when users ask for…
Extracts and summarizes key takeaways from documents, meeting notes, articles, and other text content.
Automatically finds and ranks PubMed references for each sentence in scientific text; use when you need titles, DOIs, and brief recommendation reasons from the PubMed E-utilities…
Plan cross-time-zone meeting windows for distributed teams, providing region-by-region local time mappings and tradeoff analysis for scheduling decisions.
Matches a user’s biomedical research direction, disease problem, study aim, data modality, and resource constraints to the most relevant recent algorithms and method papers.
Use study limitations drafter for academic writing workflows that need structured execution, explicit assumptions, and clear output boundaries.
Extract text from images with Tesseract OCR; use it when you need to recognize text from PNG/JPEG/TIFF/BMP images, select a language model, or run OCR via natural-language…
Interpret figures in academic papers and their captions when the input is a PDF-to-Markdown document with page markers and image links, producing a structured Markdown report for…
Classifies and organizes literature by theme, method, and conclusion; use when you need to batch-read a folder of PDF/MD/DOCX/TXT files and output a structured CSV for literature…
Builds prioritized manuscript revision plans for major or minor revisions by separating comments that require experiments, analyses, clarification, restructuring, or wording…
Build and visualize a citation network from a source/target CSV to identify key papers, communities, and emerging hotspots; use when you have citation pairs and need fast…
Check if images meet 300 DPI printing standards, and intelligently restore blurry low-resolution images using AI super-resolution technology.
Use facs gating viz style for data analysis workflows that need structured execution, explicit assumptions, and clear output boundaries.
Complete workflow for generating academic research posters from PDF literature; use when you need to extract paper content from PDFs and produce a LaTeX-based poster…
Generates science popularization articles with titles and outlines based on medical topics and style preferences.
Analyzes research hotspots and recommends literature based on a disease or topic. Use when the user wants to identify current research trends, hot topics, or get literature…
Batch extracts and verifies structured information (PMID, title, abstract, methodology, results, etc.) from clinical research literature using PMIDs.
Calibrates manuscript claim strength so wording matches the actual evidence level, study design, and validation status.
Zotero reference formatting workflow. Converts [PMID: xxxx] markers in Markdown manuscripts to Word (.docx) with native Zotero field codes (ADDIN ZOTERO_ITEM / ADDIN ZOTERO_BIBL).
Checks biomedical manuscripts against reporting guidelines such as CONSORT, STROBE, PRISMA, and TRIPOD to identify missing or weak reporting elements before submission or revision.
Standardize fragmented experimental steps into reproducible protocol documents when you need method organization, lab SOP drafting, or cross-operator reproducibility; missing…
Generates Meta-Analysis research titles based on user keywords, utilizing PubMed search results if available, or creative generation otherwise.
Generates a structured prompt framework for clinical study protocols. Supports Diagnostic, Efficacy, Etiology, and Prognosis studies.
Track manuscript resubmission deadlines and automatically generate phase-appropriate task breakdowns for academic researchers based on remaining time.
Process images for web development — resize, crop, trim whitespace, convert formats (PNG/WebP/JPG), optimise file size, generate thumbnails, create OG card images.
Generates academic reviews for molecules in diseases using PubMed research. Invoke when user needs biomedical literature review with Vancouver citation format.
Assists researchers in generating INPLASY registration content for meta-analyses from a title and optional protocol. Use when the user wants to draft a INPLASY registration form.
Perform pre-experiment calculations and generate step-by-step preparation protocols for dilutions, solution preparation, dissolution, and % concentrations when planning…
Generate forest plots for meta-analysis of survival data. Input is a CSV file containing study names, HR and 95% confidence intervals, output forest plot PNG and data table CSV.
Rewrite drafts according to target writing style or target journal format. Triggers when user says "rewrite in XX style", "match this tone", "format for XX journal", "rewrite…