Evaluates bias in medical literature (prognosis studies) using QUAPAS criteria. Use when the user wants to assess the quality or risk of bias of a medical paper text.
Access ENCORI (StarBase) database for miRNA-target, RNA-RNA, and other regulatory data. Invoke when user asks to search ENCORI or retrieve regulatory interactions.
Automates Risk of Bias 2 (ROB2) assessment for RCT papers by analyzing text against specific domains and synthesizing a report.
Suggest triage levels (Emergency, Urgent, Outpatient) based on red flag symptoms using a rule-based engine.
Calibrates manuscript claim strength so wording matches the actual evidence level, study design, and validation status.
Generates complete conventional single-gene oncology research designs from a user-provided cancer context, target gene, and validation direction.
Generates complete conventional non-oncology diagnostic machine-learning research designs from a user-provided disease context, optional mechanism theme, and validation direction.
Rapidly skim and summarize academic papers (default:PDF-to-Markdown full text with `## Page XX` pagination and image references) and output a structured extensive-reading summary…
Matches your study to appropriate journals based on topic, design, and evidence strength. Use when deciding where to submit a manuscript, comparing journal options by impact…
Scrum-inspired paper review, revision, and R&R workflow. Handles docx/tex/md/PDF in English or Chinese.
Use when normalizing bulk gene or protein expression matrices with log2 transform, z-score standardization, or min-max scaling before downstream visualization or exploratory…
Helps organize reviewer comments and generate a standardized Word (.docx) response letter that maps each change to its exact location (page/paragraph/line).
Identifies the real underlying study design used in a medical or biomedical paper, distinguishes primary and secondary design components when papers are hybrid, and converts the…
Generates comprehensive academic introductions for biological pathways, including signaling processes, markers, and inhibitors.
Calculate Body Mass Index (BMI) and Body Surface Area (BSA) for clinical assessment, obesity screening, and chemotherapy dosing.
Write and revise the Methods section of research papers to ensure reproducibility; use when preparing an IMRAD manuscript or responding to journal/reporting-guideline requirements…
Use when building a sample-level hierarchical clustering dendrogram from a bulk expression matrix and sample annotation table, especially for QC, batch inspection, or sample…
Analyze data with `smiles-de-salter` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.
Generates complete comorbidity-oriented shared-biomarker bioinformatics research designs from a user-provided disease pair and validation direction.
Perform basic local PDF operations (merge, split, extract pages/text/tables, create) when users request offline PDF processing without external services.
Use when estimating immune infiltration from bulk RNA-seq expression matrices with ssGSEA/GSVA, comparing case versus control groups, and generating downstream immune-score…
Organize requirements into Markdown/JSON mind map structures; use when you need a hierarchical outline for mind map tools (e.g., XMind, ProcessOn, FreeMind) or for documentation…
A comprehensive toolkit for survival analysis and time-to-event modeling in Python using scikit-survival; use it when you need to model censored time-to-event outcomes, fit…
Use when performing PCA principal component dimensionality reduction on tabular numeric data. Supports command-line parameter input, automatic numeric feature selection, parameter…
Guide for disposing specific chemical wastes into the correct colored waste containers, with safety precautions and regulatory compliance notes.
Generates complete phenotype-scoring bioinformatics research designs for any disease context and any user-defined phenotype, pathway, process, signature, or molecular program.
Identifies real, evidence-audited, topic-specific research gaps in medical research by first retrieving and verifying literature from trusted sources, then mapping the current…
Generates the "Results" section for meta-analysis sensitivity analysis based on statistical tables and titles.
Search and locate relevant content within a local knowledge base (files, indices, or PageIndex). Use when you need verifiable citations (file + page/paragraph) to support answers…
Assemble 6 sub-figures (A–F) into a high-resolution composite figure with consistent labels, padding, and publication-ready DPI.
A skill for performing sequence alignment using NCBI BLAST API. Supports nucleotide and protein sequence comparison against major biological databases.
Explains why studies on the same biomedical topic reach different or opposing conclusions by auditing differences in population, endpoint definition, sample source, assay or…
Matches a user’s biomedical research direction, disease problem, study aim, data modality, and resource constraints to the most relevant recent algorithms and method papers.
Generates complete two-sample Mendelian randomization (MR) research designs from a user-provided research direction.
Generates professional interview titles and questions based on expert background and topic. Provides a structured workflow for interview preparation.
Use when evaluating diagnostic biomarker performance from case-control expression data with logistic regression and ROC curves, exporting coefficient and AUC tables together with…
Spreadsheet processing and analysis for CSV/Excel; trigger when users ask to merge/clean tabular data, run statistics, add/edit Excel formulas, apply formatting, generate charts,…
Rewrites technical research content into a structured lay summary that cross-disciplinary teams can quickly understand and act on.
Organize scattered tasks into actionable lists and generate daily/weekly/deadline reminder plans when you need a structured schedule and exportable outputs (MD/CSV), with optional…
Access Cellosaurus database for cell line information and release data. Invoke when user asks to search cell lines, get cell line details by accession, or check database release…
Access CrossRef metadata for scholarly works; use when you need to resolve a DOI or search CrossRef to retrieve bibliographic details, citation/reference counts, or funder…
Use when drafting patient discharge summaries, creating personalized discharge instructions, simulating post-discharge outcomes, reducing hospital readmissions, or optimizing care…
Assists researchers with Institutional Review Board (IRB) application tasks, including drafting informed consent documents, reviewing research protocols for compliance, generating…
Use smart journal monitor for evidence insight workflows that need structured execution, explicit assumptions, and clear output boundaries.
Check for interactions between multiple medications, including severity classification and mechanism explanations.
Detects content similarity, verifies standardized citations and abbreviations, and flags potential academic integrity risks; use it before submission, during academic writing QA,…
Generates a weekly academic literature report based on keywords using PubMed. Use when the user wants to track recent research progress on a specific topic, automatically…
Use when assessing how well a survival model's predicted probabilities agree with observed outcomes by fitting a Cox model and generating bootstrap calibration curves at one or…
Query the Reactome REST API for pathway content and enrichment analyses; use when you need curated pathway data, reaction details, or overrepresentation results for a gene list.
Fix garbled text in PDF/SVG vector graphics caused by font encoding issues, making files editable in AI tools. Supports batch processing and JSON export for manual correction.
Condenses a full study into conference-submission abstract format. Use when adapting a manuscript abstract or study summary to meet a specific conference's word limit, structured…
Transforms rough email drafts into polished, professional medical correspondence.
Use preclinical pkpd analyst for data analysis workflows that need structured execution, explicit assumptions, and clear output boundaries.
Generates complete conventional non-oncology bioinformatics research designs from a user-provided disease context, process-related gene family or biological theme, and validation…
Use when building a binary classification model from an expression matrix or other omics feature matrix with LASSO logistic regression, cross-validation, and coefficient path…
An intelligent tool for precision medical literature search using PubMed's E-utilities API.
Extract PDF selectable text and full-page or segmented page images (including tables) into Markdown with per-page headings and image links; use when you need both readable text…
Use when analyzing bulk RNA-seq or microarray expression data to identify differentially expressed genes between two biological groups (case vs control), with volcano plots and…
Use when cleaning clinical trial data, preparing data for FDA/EMA submission, standardizing SDTM datasets, handling missing values in clinical studies, detecting outliers in lab…
Converts existing manuscript content into LaTeX format aligned with a target journal, conference, or template while preserving manuscript meaning and structural integrity.