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pyhealth

Category: Science & Research  ·  Sub-category: science-misc  ·  Last updated:
ai:agent
Build clinical/healthcare deep-learning pipelines with PyHealth — loading EHR/signal/imaging datasets (MIMIC-III/IV, eICU, OMOP, SleepEDF, ChestXray14, EHRShot), defining tasks (mortality, readmission, length-of-stay, drug recommendation, sleep staging, ICD coding, EEG events), instantiating models (Transformer, RETAIN, GAMENet, SafeDrug, MICRON, StageNet, AdaCare, CNN/RNN/MLP), training with the PyHealth Trainer, computing clinical metrics, and using medical code utilities (ICD/ATC/NDC/RxNorm lookup and cross-mapping). Use this skill whenever the user mentions PyHealth, MIMIC, eICU, OMOP, EHR modeling, clinical prediction, drug recommendation, sleep staging, medical code mapping, ICD/ATC codes, or any healthcare ML pipeline that fits the dataset → task → model → trainer → metrics pattern, even if "PyHealth" isn't named explicitly.
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From the source SKILL.md

PyHealth (https://pyhealth.dev/) is a Python toolkit for clinical deep learning. It provides a unified, modular pipeline across electronic health records (EHR), physiological signals, and medical imaging.

What this skill does

pyhealth is a community-contributed Claude Code skill in the science-misc sub-category. It ships as a SKILL.md file that Claude Code auto-discovers under ~/.claude/skills/pyhealth-k-dense-ai-scientific-agent-ski-2/ and loads when your prompt matches the skill's trigger.

Who uses this skill

The pyhealth Claude Code skill is built for researchers, data scientists, academics, and analysts working with complex data and scientific literature. It's part of ClaudSkills (also referred to as Claude Skills or Claude Code Skills) — the open community-curated registry of 174,000+ SKILL.md files for Anthropic's Claude Code agent and the wider Claude ecosystem (Claude API, Claude Agent SDK).

How to install

Free

Manual install (2 steps)

mkdir -p ~/.claude/skills/pyhealth-k-dense-ai-scientific-agent-ski-2
curl -L https://claudskills.com/skills/pyhealth-k-dense-ai-scientific-agent-ski-2/SKILL.md \
  -o ~/.claude/skills/pyhealth-k-dense-ai-scientific-agent-ski-2/SKILL.md

Or just download SKILL.md directly and drop it into ~/.claude/skills/pyhealth-k-dense-ai-scientific-agent-ski-2/. Claude Code auto-discovers it on next session.

Skills live at ~/.claude/skills/pyhealth-k-dense-ai-scientific-agent-ski-2/SKILL.md on macOS/Linux, or %USERPROFILE%\.claude\skills\pyhealth-k-dense-ai-scientific-agent-ski-2\SKILL.md on Windows. See the full install guide for step-by-step instructions.

Telegram

📱 Install from your phone or desktop Telegram

Open @claudskills_bot on Telegram, tap Open Desktop App, and the desktop app installs this skill for you. Or share the bot link with a colleague — they get the same one-tap install. Learn more →

Pro

One-click install via the desktop app

The ClaudSkills desktop app installs any skill directly into ~/.claude/skills/ with one click — no terminal required. Pro starts at $9/mo or $149 lifetime.

Pro

For the full experience including quality scoring and one-click install features for each skill — upgrade to Pro.

See pricing → Download desktop app

Frequently asked questions

How do I install the pyhealth Claude Code skill?
Install via the ClaudSkills desktop app (one click) or copy SKILL.md from the source repository to ~/.claude/skills/pyhealth-k-dense-ai-scientific-agent-ski-2/SKILL.md and restart Claude Code. Both flows are detailed at claudskills.com/install/.
What does the pyhealth skill do?
Build clinical/healthcare deep-learning pipelines with PyHealth — loading EHR/signal/imaging datasets (MIMIC-III/IV, eICU, OMOP, SleepEDF, ChestXray14, EHRShot), defining tasks (mortality, readmission, length-of-stay, drug recommendation, sleep staging, ICD coding, EEG events), instantiating models (Transformer, RETAIN, GAMENet, SafeDrug, MICRON, StageNet, AdaCare, CNN/RNN/MLP), training with the PyHealth Trainer, computing clinical metrics, and using medical code utilities (ICD/ATC/NDC/RxNorm lookup and cross-mapping). Use this skill whenever the user mentions PyHealth, MIMIC, eICU, OMOP, EHR modeling, clinical prediction, drug recommendation, sleep staging, medical code mapping, ICD/ATC codes, or any healthcare ML pipeline that fits the dataset → task → model → trainer → metrics pattern, even if "PyHealth" isn't named explicitly.
Is this skill free to install?
Yes. ClaudSkills is an open registry — every skill keeps its source repository's license, and manual install via copy is free. ClaudSkills Pro ($9/mo, $79/yr, or $149 one-time) adds one-click install via the desktop app and a multi-signal Quality Score.
When should I use the pyhealth skill?
Use pyhealth when your Claude Code task falls under the Science & Research category — specifically in the science misc area. Claude Code auto-discovers installed skills and invokes the right one based on the task description, so you can also ask Claude directly (e.g. "use pyhealth" or describe the task and let Claude pick). Browse related skills at /category/science/.
What is a Claude Code skill and how does the pyhealth skill fit in?
A Claude Code skill is a SKILL.md file that lives under ~/.claude/skills/<name>/ and tells the Claude Code CLI agent how to perform a specific task (instructions, prompts, allowed tools). Skills are auto-discovered at session start. pyhealth is one of 67,000+ skills indexed in the open ClaudSkills catalog, classified under the Science & Research category. Learn more at /learn/what-is-a-claude-skill/.

Attribution & license

Cite this skill

If you reference this skill in a blog post, paper, or documentation, you can cite it as:

APA
majiayu000. (2026). pyhealth [Claude Code skill]. ClaudSkills. https://claudskills.com/skills/pyhealth-k-dense-ai-scientific-agent-ski-2/
BibTeX
@misc{pyhealth-k-dense-ai-scientific-agent-ski-2-2026,
  author    = {majiayu000},
  title     = {pyhealth [Claude Code skill]},
  year      = {2026},
  publisher = {ClaudSkills},
  url       = {https://claudskills.com/skills/pyhealth-k-dense-ai-scientific-agent-ski-2/}
}

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