Search and locate relevant content within a local knowledge base (files, indices, or PageIndex). Use when you need verifiable citations (file + page/paragraph) to support answers…
Organize study notes into a structured knowledge-point outline and export to a .docx summary when you need a shareable, hierarchical document from Word/PPT/Text/Markdown inputs.
Replace an ID photo background color (blue/white/red) and/or add a configurable text watermark when you need compliant ID-photo variants from local JPG/PNG files.
A real-time monitoring system for identifying "incubation period" research hotspots in biological and medical sciences before they are defined by mainstream journals.
Convert reference lists and in-text citations between RIS, BibTeX, plain text, and CSL-JSON, triggered when you need to unify bibliography/citation styles before journal…
Encrypt/decrypt local files, redact sensitive information in documents, and validate password strength when handling private data or preparing files for sharing.
Accesses BioGRID ORCS CRISPR screen data (organisms, screens, scores). Invoke when user needs to search CRISPR screens, get vocabulary, or retrieve gene scores.
Assists R&D teams with patent technical disclosure drafting and patent/novelty search analysis; use when users ask to write a patent disclosure, structure an invention…
Use when refactoring research code for publication, adding documentation to existing analysis scripts, creating reproducible computational workflows, or preparing code for sharing…
Rewrites technical research content into a structured lay summary that cross-disciplinary teams can quickly understand and act on.
Run a submission-readiness preflight on a manuscript before arXiv upload. Use when the user is preparing an arXiv submission, asks to check a paper before uploading, mentions…
Draw ROB2 risk-of-bias plots, including a Traffic Light Plot and a Summary Bar Plot. Input is a CSV file with ROB2 assessments for each study; output are two PNG plot files.
Scan reagent barcodes or IDs, log expiration dates, and generate multi-level alerts before reagent expiry to support laboratory inventory management.
Check if referenced bioinformatics software/code licenses allow commercial use (GPL vs MIT, etc.).
Converts existing manuscript content into LaTeX format aligned with a target journal, conference, or template while preserving manuscript meaning and structural integrity.
Access the HGNC (HUGO Gene Nomenclature Committee) database to search for and retrieve gene information including symbols, names, IDs, and other metadata.
Unified tool for calculating sample sizes for Diagnostic, Efficacy, Etiology, and Prognosis clinical studies.
Create literature-report PPTX decks from PDF papers. Use when you must extract a paper’s metadata, summarize the study, interpret Results/Figures/Tables, and generate slides with…
One-click synchronization and standardization of reference formats in literature management tools, intelligently fixing metadata errors.
Generates structured biomedical outlines for review articles, discussion sections, and thesis proposals.
Use when performing time-dependent ROC curve analysis for survival data with follow-up time, event status, and a numeric marker.
Use when training a LightGBM model on tabular data in R and returning model metrics, feature importance ranking tables, and feature importance plots.
Organizes biomedical figures, analyses, and result blocks into a clear Results section structure with disciplined narrative ordering and evidence-aware presentation.
Access bioDBnet REST services for biological identifier conversion, pathway retrieval, and ortholog mapping.
Access CrossRef metadata for scholarly works; use when you need to resolve a DOI or search CrossRef to retrieve bibliographic details, citation/reference counts, or funder…
Use when selecting predictive genes or other molecular features from bulk expression matrices for binary case-vs-control classification with elastic net logistic regression,…
Generates complete comorbidity-oriented shared-biomarker bioinformatics research designs from a user-provided disease pair and validation direction.
Use when performing GO and KEGG enrichment on a gene list from bulk RNA-seq or microarray studies, then generating a combined GO/KEGG dot chart.
Use market access value for academic writing workflows that need structured execution, explicit assumptions, and clear output boundaries.
Generates a full expert interview article including introduction, Q&A body, and summary based on interview questions and expert background.
Search for gene expression DataSets and Profiles in the NCBI GEO database. Use this skill when the user wants to find microarray, RNA-seq, or other genomic data by keywords,…
Generates complete programmed-cell-death (PCD) / regulated-cell-death (RCD) bulk-transcriptome oncology research designs from a user-provided disease and mechanism theme — from…
Generates complete bidirectional multi-phenotype Mendelian randomization research designs from a user-provided exposure family and outcome family.
Maps whether a biomedical research topic, subtopic, or study angle is truly saturated, superficially crowded, strategically occupied, or still open for differentiated entry.
Verifies whether a scientific or biomedical claim is actually supported by the cited original papers rather than by citation drift, overstatement, selective citation, or…
Designs primary aims, secondary aims, and testable hypotheses from broad biomedical research ideas. Use this skill when a user needs to convert a loose study idea into a tighter…
Builds clear, executable, and auditable inclusion and exclusion criteria for biomedical and clinical research protocols.
Generates complete non-tumor biomedical machine learning research designs from a user-provided research direction.
Systematically maps mechanism evidence for a disease from molecules to pathways, cell types, tissues, biological consequences, and clinical phenotypes.
Generates complete dual-disease shared-transcriptome biomarker and hub-gene research designs from a user-provided disease pair and shared-biology direction.
Create and read Microsoft Word (.docx) documents. Use this skill when you need to generate reports/letters/templates as .docx or extract readable text from existing .docx files.
Generates complete conventional oncology bulk-transcriptome biomarker and hub-gene research designs from a user-provided cancer type and study direction.
Extends a mechanistic or association-level biomedical finding into a staged validation pathway that moves from descriptive evidence toward stronger functional support, mechanistic…
Designs complete single-cell research plans from a user-provided biomedical direction. Always use this skill whenever a user wants to design, scope, or structure a single — from…
Finds translational opportunities that connect basic-research discoveries to clinically meaningful use cases such as diagnosis, stratification, prognosis, treatment response…
Designs discovery, modeling, and validation workflows for prognostic biomarkers in biomedical and clinical research.
Generates complete Mendelian randomization study designs from a user-provided exposure and outcome direction.
Converts an audited medical research gap into a complete, structured, gap-traceable study design. Always use this skill whenever a user already has one or more candidate research…
Plans confounder control, variable adjustment logic, and bias mitigation strategies at the protocol stage for clinical, epidemiologic, translational, observational, and biomarker…
Generates complete bidirectional multi-phenotype Mendelian randomization research designs from a user-provided exposure family and outcome family.
Detects methodological gaps across study design, analysis, validation, bias control, reproducibility, and implementation readiness within a biomedical research area.
Clarifies a vague clinical or biomedical research idea into a structured, bounded, searchable, researchable, and testable question.
Designs complete single-cell research plans from a user-provided biomedical direction. Always use this skill whenever a user wants to design, scope, or structure a single — from…
Use this skill to compute ESTIMATE immune-related microenvironment scores from a bulk expression matrix, generate an ESTIMATE score heatmap, and optionally generate group-wise…
Generates complete tumor immune-infiltration-guided bulk-transcriptome diagnostic biomarker and machine-learning research designs from a user-provided cancer type and stu — from…
Designs complete integrated research plans for bulk transcriptomics, proteomics, metabolomics, and related omics from a user-provided biomedical direction.
Generates complete cross-disease shared-biomarker bioinformatics research designs from a user-provided disease pair and validation direction.
Access the ENCODE Project REST API to search for and retrieve biological data (biosamples, experiments, etc.).
A medical-research-native literature reading skill for users with clinical, bioinformatics, translational, and basic experimental backgrounds.
Collects candidate biomedical literature across multiple databases, adapts search logic by database, preserves source metadata, and organizes results into a structured,…