Creates reproducible Jupyter notebooks for bioinformatics analysis with parameterization using papermill.
End-to-end somatic variant calling from tumor-normal paired samples using Mutect2 or Strelka2. Covers preprocessing, variant calling, filtering, and annotation for cancer — from…
Generate variant statistics, sample concordance, and quality metrics using bcftools stats and gtcheck.
Mark and remove PCR/optical duplicates using samtools fixmate and markdup. Use when preparing alignments for variant calling or when duplicate reads would bias analysis.
AI-powered cytokine release syndrome (CRS) and cytokine storm analysis for prediction, monitoring, and management in immunotherapy and infectious disease.
Infer orthologous gene groups across species using OrthoFinder and ProteinOrtho. Identify orthologs, paralogs, and co-orthologs for comparative genomics and functional annotation…
Generate consensus FASTA sequences by applying VCF variants to a reference using bcftools consensus. Use when creating sample-specific reference sequences or reconstructi — from…
Validate alignment quality with insert size distribution, proper pairing rates, GC bias, strand balance, and other post-alignment metrics.
Detect signatures of natural selection using Fst, Tajima's D, iHS, XP-EHH, and other selection statistics.
End-to-end genome-scale metabolic modeling from genome sequence to flux predictions. Covers automated reconstruction with CarveMe, model validation with memote, FBA/FVA a — from…
Preprocess CLIP-seq data including adapter trimming, UMI extraction, and PCR duplicate removal. Use when preparing raw CLIP, iCLIP, or eCLIP reads for peak calling.
Build project documentation sites with MkDocs static site generator. USE WHEN user mentions mkdocs, documentation site, docs site, project documentation, OR wants to create,…
Structure raw clinical notes into SOAP-format summaries with explicit contradictions, missing data, and ICD-linked assessments using the provided prompt + usage script.
End-to-end ATAC-seq workflow from FASTQ files to differential accessibility and TF footprinting. Covers alignment, peak calling with MACS3, QC metrics, and optional TOBIA — from…
AI-powered T-cell receptor repertoire analysis for cancer diagnosis, immunotherapy response prediction, and therapeutic TCR selection using deep learning and multi-layer ML…
AI-powered analysis of patient-derived xenograft (PDX) models for drug response prediction, translational research, and personalized treatment selection.
Build maximum likelihood phylogenetic trees using IQ-TREE2 and RAxML-ng. Use when inferring publication-quality trees with model selection, ultrafast bootstrap, or partitioned…
Generates executable Python protocols for Opentrons OT-2 and Flex robots from natural language descriptions. — from bg-szy/TOP-SKILLS
Python population genetics with scikit-allel. Read VCF files, compute allele frequencies, calculate diversity statistics, perform PCA, and run selection scans using Genot — from…
Write cold emails that get replies using proven frameworks (AIDA, PAS, BAB). Enforces best practices like 50-125 word limit and personalized openers.
Schedule meetings, find free time, and manage Google Calendar — all connected to your contact network via Rarefriend.
Never forget a person again — search your entire professional network, recall exactly what you discussed, and always know who you know at any company.
Your Google Contacts — supercharged with notes, tags, and relationship memory via Rarefriend. Find anyone instantly, remember every conversation, and never lose context o — from…
Generate images/videos via Higgsfield AI. Default: GPT Image 2 for images/design/text, Seedance 2.0 for video, Nano Banana 2/Pro for character/reference image work, Marketing…
Schedule meetings, find free time, and manage Google Calendar — all connected to your contact network via Rarefriend.
Turn your LinkedIn network into a searchable, annotated CRM — find who you know at any company, prep for meetings, and never lose context on a connection again.
Review code for Playwright Guidelines compliance. Use when asked to "review my playwright tests", "check accessibility", or "check my tests against best practices".
Never forget a person again — search your entire professional network, recall exactly what you discussed, and always know who you know at any company.
Review UI code for Web Interface Guidelines compliance. Use when asked to "review my UI", "check accessibility", "audit design", "review UX", or "check my site against be — from…
Create beautiful, accessible user interfaces with shadcn/ui components (built on Radix UI + Tailwind), Tailwind CSS utility-first styling, and canvas-based visual designs — from…
Generate brand-quality product images through Higgsfield product-photoshoot prompt enhancement on GPT Image 2 / gpt_image_2. Entry point for professional brand/product visuals.
Manage Microsoft Outlook contacts and calendar from your AI assistant — search contacts, schedule Teams meetings, find free time, and keep relationship notes all in one p — from…
Comprehensive design skill: brand identity, design tokens, UI styling, logo generation (55 styles, Gemini AI), corporate identity program (50 deliverables, CIP mockups) — from…
Build, edit, and deploy full-stack websites via the Higgsfield CLI (`higgsfield website …`). Each site is a React 19 + TanStack Start SSR app in one Cloudflare Worker…
Token architecture, component specifications, and slide generation. Three-layer tokens (primitive→semantic→component), CSS variables, spacing/typography scales, component — from…
Manage Microsoft Outlook contacts and calendar from your AI assistant — search contacts, schedule Teams meetings, find free time, and keep relationship notes all in one p — from…
Train a Soul Character — a personalized model on a person's face that Higgsfield uses for identity-faithful image and video generation.
Search your Microsoft Outlook inbox and cross-reference emails with your contact history — find any email instantly and see full relationship context alongside it via Rar — from…
Your Google Contacts — supercharged with notes, tags, and relationship memory via Rarefriend. Find anyone instantly, remember every conversation, and never lose context o — from…
Turn your LinkedIn network into a searchable, annotated CRM — find who you know at any company, prep for meetings, and never lose context on a connection again.
Search your Microsoft Outlook inbox and cross-reference emails with your contact history — find any email instantly and see full relationship context alongside it via Rar — from…
Hand the current conversation off to a fresh background agent that picks up the work immediately.
Generate insightful, publication-quality visualizations from complex datasets.
Validate GenLayer intelligent contracts with the GenVM linter. — from bg-szy/TOP-SKILLS
Research Literature agent for healthcare workflows.
Claims Appeals agent for healthcare workflows.
Write and run integration tests against a GenLayer environment.
Write and run fast direct mode tests for GenLayer intelligent contracts. — from bg-szy/TOP-SKILLS
FHIR Development agent for healthcare workflows.
Use the GenLayer CLI to deploy, interact with, and debug intelligent contracts. — from bg-szy/TOP-SKILLS
Regulatory Drafting agent for healthcare workflows.
Lab Results agent for healthcare workflows.
Generate marketplace product image cards through Higgsfield: compliant main image, secondary product images, and A+ style content modules.
Automate browser interactions, test web pages and work with Playwright tests.
Care Coordination agent for healthcare workflows.
Execute database migrations across ORMs and platforms with zero-downtime strategies, data transformation, and rollback procedures.
Estimate SNP heritability and partition it across functional annotations, cell types, and loci from GWAS summary statistics or individual-level genotypes.
Browser automation for AI agents via inference.sh. Navigate web pages, interact with elements using @e refs, take screenshots, record video.
Generate images with Google Gemini native image models via inference.sh CLI. Models: Gemini 3 Pro Image, Gemini 2.5 Flash Image.
Search for tokens or entities by name. Use when you have a token name and need the full address, or want to find an entity. — from bg-szy/TOP-SKILLS