Query STRING API for protein-protein interactions (59M proteins, 20B interactions). Network analysis, GO/KEGG enrichment, interaction discovery, 5000+ species, for system — from…
Create isolated git worktrees with smart directory selection and safety verification. Use this when starting feature work that needs isolation, parallel development, or s — from…
Create AI avatar and talking head videos with OmniHuman, Fabric, PixVerse via inference.sh CLI. Models: OmniHuman 1.5, OmniHuman 1.0, Fabric 1.0, PixVerse Lipsync.
Automate repetitive development tasks and workflows. Use when creating build scripts, automating deployments, or setting up development workflows.
Edit images with OpenAI GPT Image 2 (the `/edit` endpoint of ChatGPT Images 2.0) on RunComfy — bundled with the model's documented prompting patterns so the skill gets sh — from…
Robust workflow checkpoint and resume. Handles session interruption, state recovery, and safe resume across all workflow phases.
When the user wants to create, optimize, or audit solutions pages. Also use when the user mentions "solutions," "solutions page," "by industry," "industry solutions," "by company…
Performs alchemical free-energy calculations including relative binding free energy (RBFE / FEP+) and absolute binding free energy (ABFE) via OpenFE, FEP+, GROMACS, AMBER pmemd,…
Load and parse mass spectrometry data formats including mzML, mzXML, and quantification tool outputs like MaxQuant proteinGroups.txt.
Cloud-based AI swarm deployment and event-driven workflow automation with Flow Nexus platform — from bg-szy/TOP-SKILLS
Generate AI videos with Google Veo, Seedance, Wan, Grok and 40+ models via inference.sh CLI. Models: Veo 3.1, Veo 3, Seedance 1.5 Pro, Wan 2.5, Grok Imagine Video, OmniHu — from…
Use only when the user explicitly requests strict code-cell-only output for a Jupyter or undergraduate data-science task, or when an ITX2007 assignment requires that format.
Generate AI videos with Google Veo, Seedance 2.0, HappyHorse, Wan, Grok and 40+ models via inference.sh CLI.
Build reusable Terraform modules for AWS, Azure, and GCP infrastructure following infrastructure-as-code best practices.
Use when receiving code review feedback, before implementing suggestions, especially if feedback seems unclear or technically questionable - requires technical rigor and — from…
JavaScript/TypeScript ES2024+, async/await, DOM manipulation, Node.js, and API integration. Use when writing vanilla JS/TS code, working with REST/fetch APIs, implementing…
Use when analyzing binary structure, disassembling code, or decompiling functions. Deep static analysis via radare2 (r2) and Ghidra headless - function enumeration, cross — from…
Detect copy number variants from targeted/exome sequencing using CNVkit. Supports tumor-normal pairs, tumor-only, and germline CNV calling.
Region edits across video frames on RunComfy via the `runcomfy` CLI — remove an object that appears across many frames, clean up wires or watermarks, replace a region wit — from…
Generate text-to-video with HappyHorse 1.0 on RunComfy. Documents HappyHorse 1.0's strengths (#1 on Artificial Analysis Video Arena, native 1080p with in-pass synchronize — from…
Use when the user asks for Community Onboarding from supplied source materials. Trigger language: community onboarding; member onboarding; paid community start here.
Identify tumor neoantigens from somatic mutations using pVACtools for personalized cancer immunotherapy.
Create distinctive, production-grade frontend interfaces with intentional aesthetics, high craft, and non-generic visual identity.
Detect sample contamination and cross-species reads using FastQ Screen. Screen reads against multiple reference genomes to identify bacterial, viral, adapter, or sample s — from…
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3).
Selects bounded, graph-informed source slices with Trailmark and delegates focused code analysis or patch-proposal work to a smaller subagent.
Frames the phasing/imputation pipeline before any tool runs: phasing and imputation are one Li-Stephens copying HMM (recombination is the transition, mutation the emission, the…
Character consistency across AI-generated images with reference sheets and LoRA techniques. Covers turnaround views, expression sheets, color palettes, and style consiste — from…
Parses, queries, converts, and extracts from GTF and GFF3 gene-model annotation files - walking the gene/transcript/exon/CDS hierarchy with gffutils (queryable SQLite DB),…
Use when executing implementation plans with independent tasks in the current session — from bg-szy/TOP-SKILLS
Turn an RFP and a folder of your past proposals, case studies, and capability docs into a requirement-by-requirement compliance matrix and a drafted response.
Use when building App Store screenshot pages, generating exportable marketing screenshots for iOS apps, or creating programmatic screenshot generators with Next.js.
AI video generation for agents through Image Skill's zero-setup hosted creative runtime. Use when a prompt should become a durable hosted video without provider credentials,…
Checklist-style reference for OmicVerse downstream tutorials covering AUCell scoring, metacell DEG, and related exports. — from bg-szy/TOP-SKILLS
Generate AI music on RunComfy via the `runcomfy` CLI — a smart router across the music-model catalog.
Assesses genetic health of populations for conservation with Ne estimation across time horizons (LDNe NeEstimator V2 option-file API + SNeP physical-linkage correction; recent…
Python library for working with geospatial vector data including shapefiles, GeoJSON, and GeoPackage files.
Identify and prioritize causal variants at GWAS loci using statistical fine-mapping and locus-to-gene predictions.
Basecalls raw Oxford Nanopore signal (POD5/FAST5) into reads with Dorado, choosing the chemistry-matched model and accuracy tier (fast/hac/sup), requesting modified bases…
Plot per-group distributions of continuous data using boxplots, violins, beeswarms, quasirandom jitter, and raincloud plots with sample-size honesty (Weissgerber 2015),…
Analyzes single-cell pooled CRISPR screens (Perturb-seq, CROP-seq, Perturb-CITE-seq, ECCITE-seq, multiome) where each cell carries an sgRNA and a scRNA-seq / surface-protein /…
Performs retrosynthetic planning using AiZynthFinder (MCTS, template-based), Chemformer (template-free transformer), ASKCOS, and emerging RetroSynFormer with explicit handling of…
Writes and reviews structured Lean 4 proofs and designs Lean libraries following Mathlib conventions.
Comprehensive document creation, editing, and analysis with support for tracked changes, comments, formatting preservation, and text extraction.
Use when facing 2+ independent tasks that can be worked on without shared state or sequential dependencies — from bg-szy/TOP-SKILLS
When the user wants to create X (Twitter) post copy, threads, or optimize for X platform. Also use when the user mentions "X post," "X thread," "Twitter post," "Twitter t — from…
Retrieves protein structure data from RCSB PDB, PDBe, and AlphaFold with protein disambiguation, quality assessment, and comprehensive structural profiles.
Structured competitive analysis with feature matrices, SWOT, positioning maps, and UX review. Covers research frameworks, pricing comparison, review mining, and visual de — from…
Formal, evidence-based software engineering audit producing a scored, gated release verdict. Use when asked for a "full audit", "production audit", "release audit", "formal…
Run 150+ AI apps via inference.sh CLI - image generation, video creation, LLMs, search, 3D, Twitter automation.
Build NEAR Protocol dApps. Use for: (1) creating new NEAR dApps with `create-near-app` (Vite+React, Next.js), (2) adding NEAR wallet connection to existing apps with `@ho — from…
Remove AI-generated code slop from a branch. Use when cleaning up AI-generated code, removing unnecessary comments, defensive checks, or type casts.
Latch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy serverless workflows, LatchFile/LatchDir, Nextflow/Snakema — from…
Prepares a deposited or predicted structure for docking, molecular dynamics, or electrostatics by adding hydrogens, assigning protonation and tautomer states, and filling missing…
Reconcile gene trees against a species tree under probabilistic models of duplication, transfer, and loss (DTL) using ALE (Szöllősi 2013 amalgamated likelihood), GeneRax (Morel…
Browser automation for AI agents via inference.sh. Navigate web pages, interact with elements using @e refs, take screenshots, record video.
Review UI code for Web Interface Guidelines compliance. Use when asked to "review my UI", "check accessibility", "audit design", "review UX", or "check my site against be — from…
End-to-end drug discovery platform combining ChEMBL compounds, DrugBank, targets, and FDA labels. Natural language powered by Valyu.
Creates sashimi plots showing RNA-seq read coverage and splice junction counts using ggsashimi or rmats2sashimiplot.
Quantum physics simulation library for open quantum systems. Use when studying master equations, Lindblad dynamics, decoherence, quantum optics, or cavity QED.